View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_10 (Length: 404)
Name: NF2258_1D_low_10
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 49008638 - 49008235
Alignment:
| Q |
1 |
aaaagacgatctggtgatgggcgcgatattcttctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtcca |
100 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008638 |
aaaagacgatctcgtgatggctgcgatattcttctgagtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtcca |
49008539 |
T |
|
| Q |
101 |
ggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008538 |
ggatcaagtgctctattgggattgatatgtccggctcccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgt |
49008439 |
T |
|
| Q |
201 |
tgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
49008438 |
tgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcatttcttttaaaagtgctgctacacctgcaacgtg |
49008339 |
T |
|
| Q |
301 |
tggacatgacattgatgtcccacttaacaagttgaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccatgaagct |
400 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008338 |
tggacatgacattgatgttccacttaacaagttgaagttgttgaagagattgttctggaattgcagctctgttgctggaacattttgaggccatgaagct |
49008239 |
T |
|
| Q |
401 |
aaga |
404 |
Q |
| |
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|||| |
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| T |
49008238 |
aaga |
49008235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 38 - 347
Target Start/End: Original strand, 21686791 - 21687100
Alignment:
| Q |
38 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
137 |
Q |
| |
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|||||||| | |||||| |||||||| | |||||||||| || |||||||||||| |||||||||||||||||||| || || ||||| || |||| |
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| T |
21686791 |
gtgaagttaagtgcacaaagaagattaatataatcttgtacaccgatatcataaacaagaccaggatcaagtgctctattagggttaatatgaccagctc |
21686890 |
T |
|
| Q |
138 |
ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct |
237 |
Q |
| |
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|||| || ||||| | |||| ||||| |||||| ||||||||| |||| |||| || || |||||||| ||||||||||||||||| || ||||| || |
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| T |
21686891 |
ccaatgcaaaaggagttgctgctctgttaccatttccaatgtctttgatatgttccttagtattgtctaatatgtctgatgttgtcataattgccgacct |
21686990 |
T |
|
| Q |
238 |
aatggctgctgggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatgacattgatgtcccacttaacaagttgaag |
337 |
Q |
| |
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||| | || |||||||||| | ||| | |||||||||| |||||||||| |||||| |||||||||||||| ||||| ||| || ||| |||||| |
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| T |
21686991 |
aatagatgacgggctccaaccattgtgtgccccttttaaaagcgctgctacacctgcaacatgtggacatgacatagatgttccatctatcaaattgaag |
21687090 |
T |
|
| Q |
338 |
ttgttgaaga |
347 |
Q |
| |
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||||| |||| |
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|
| T |
21687091 |
ttgttaaaga |
21687100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 38 - 344
Target Start/End: Complemental strand, 8963456 - 8963150
Alignment:
| Q |
38 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
137 |
Q |
| |
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|||||||| | |||||| |||| ||| |||||||||||| || |||||||||||| ||||| ||||||||| |||| || |||||||| || |||| |
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| T |
8963456 |
gtgaagttaagtgcacaaagaaaattaacataatcttgtacaccaatatcataaacaagaccagggtcaagtgctttattagggttgatatgaccagctc |
8963357 |
T |
|
| Q |
138 |
ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct |
237 |
Q |
| |
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|||| || ||||||| |||| | ||| | | || ||||||||| |||| ||||| || ||||| || || |||||||||||||||||||| ||||| || |
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| T |
8963356 |
ccaatgcaaaaggtgttgctgctatgttatcttttccaatgtctttgataagttccttagtgttatcaaatatgtctgatgttgtcatcattgccgacct |
8963257 |
T |
|
| Q |
238 |
aatggctgctgggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatgacattgatgtcccacttaacaagttgaag |
337 |
Q |
| |
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||| |||| ||||||||| || || || |||| ||||||||| |||||| ||||| || ||||||||||| ||||| ||| |||| || ||||| |
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| T |
8963256 |
aatagctgtcgggctccaatcagcatgtgctcctttcaaaagtgctcctacaccggcaacatgaggacatgacatagatgttccagttaaaaaattgaac |
8963157 |
T |
|
| Q |
338 |
ttgttga |
344 |
Q |
| |
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||||||| |
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| T |
8963156 |
ttgttga |
8963150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 38 - 347
Target Start/End: Complemental strand, 8974852 - 8974543
Alignment:
| Q |
38 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctc |
137 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||||||||| || ||||||||||||||||||| | ||||||| | ||||| |||||||| || |||| |
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| T |
8974852 |
gtgaagttgagtgcacaaagaagattgacataatcttgtacaccaacatcataaacaagtccagggttaagtgctttgttggggttgatatgaccagctc |
8974753 |
T |
|
| Q |
138 |
ccaaagctaaaggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatct |
237 |
Q |
| |
|
| || ||||||| ||| ||| ||| || ||||||||| | |||||||| || || || || || |||||||||||||||||||| || || || |
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| T |
8974752 |
cttgtgcaaaaggtgttgctacgttgttaccttttccaatgtcttttatgagttccttagtattatcaaatatgtctgatgttgtcatcattgctgacct |
8974653 |
T |
|
| Q |
238 |
aatggctgctgggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatgacattgatgtcccacttaacaagttgaag |
337 |
Q |
| |
|
||| ||||| ||||||||| | || | |||| ||||||||| |||||| ||||| || ||| ||||||| ||||| |||||||| || ||||| |
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| T |
8974652 |
aatagctgcagggctccaatcaacatgtgcagctttcaaaagtgctcctacaccagcaacatgaggagatgacatagatgttccacttaaaaaattgaac |
8974553 |
T |
|
| Q |
338 |
ttgttgaaga |
347 |
Q |
| |
|
|||||||||| |
|
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| T |
8974552 |
ttgttgaaga |
8974543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 8945628 - 8945712
Alignment:
| Q |
38 |
gtgaagtttaatgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggat |
122 |
Q |
| |
|
|||||||| | |||||| |||||||| |||||||||||| || ||||||||||||| ||||| ||||||||||||||||||| |
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| T |
8945628 |
gtgaagttaagtgcacaaagaagattaacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattgggat |
8945712 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 347
Target Start/End: Complemental strand, 8958431 - 8958133
Alignment:
| Q |
49 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa |
148 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||||||||| ||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||| |
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| T |
8958431 |
tgcacaaagaagattaacataatcttgtacaccaacatcataaataagaccagggtcaagtgctctatttggattaacatgaccagctcccaatgcaaaa |
8958332 |
T |
|
| Q |
149 |
ggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctg |
248 |
Q |
| |
|
|| | |||| | | | | |||| ||||||||| | || |||| || || || || | ||||| || |||||||| || ||||| | ||| || || | |
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| T |
8958331 |
ggagttgctgctttattatcatttccaatgtctttaatatgttccttagtattatcaattatgtccgacgttgtcataattgccgaccgaatcgcggcag |
8958232 |
T |
|
| Q |
249 |
ggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatgacattgatgtcccacttaacaagttgaagttgttgaaga |
347 |
Q |
| |
|
|||||||| | ||| || |||| |||||||| || |||| |||||| || ||||||| ||| ||||| ||||||| || ||||| |||||||||| |
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|
| T |
8958231 |
ggctccaatcaccgtgtgctcctttcaaaagtgccgcgacacctgcaacatgaggacatgccatagatgttccacttatcacattgaacttgttgaaga |
8958133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 347
Target Start/End: Original strand, 8945799 - 8945937
Alignment:
| Q |
209 |
atgtctgatgttgtcatcatagccgatctaatggctgctgggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatg |
308 |
Q |
| |
|
|||| |||||||||||| || ||||| || || ||||| ||||||||| | || || |||||||||||||| |||||| ||||| || ||||||| |
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| T |
8945799 |
atgtttgatgttgtcataattgccgaccttatagctgcagggctccaatcaacacgcgctccttttaaaagtgctcctacaccggcaacatgaggacatg |
8945898 |
T |
|
| Q |
309 |
acattgatgtcccacttaacaagttgaagttgttgaaga |
347 |
Q |
| |
|
|| | ||||| ||| |||| || ||||| |||||||||| |
|
|
| T |
8945899 |
acgtagatgttccagttaaaaatttgaacttgttgaaga |
8945937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 345
Target Start/End: Original strand, 34962422 - 34962715
Alignment:
| Q |
49 |
tgcacatagaagattcacataatcttgttttcctgcatcataaacaagtccaggatcaagtgctctattgggattgatatgtccggctcccaaagctaaa |
148 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||| ||||| | ||| || |||||||| || ||| |
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| T |
34962422 |
tgcacaaagaagattcacataatcttgtacaccaacatcataaacaagaccagggtcaagtgctctattaggattaacatgaccagctcccaatgcaaaa |
34962521 |
T |
|
| Q |
149 |
ggtgaagctggtctgtaaccattaccaatgtctgtgatgagttcttttgtgttgtctaacatgtctgatgttgtcatcatagccgatctaatggctgctg |
248 |
Q |
| |
|
|||| |||| | ||| | | ||||||||| |||| |||| || | || || || ||||||||||||||||| || ||||| | ||| ||||||| |
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| T |
34962522 |
ggtgttgctgctttgt---ctgttccaatgtctttgatttgttccttagaattatcaaatatgtctgatgttgtcattattgccgaccgaattgctgctg |
34962618 |
T |
|
| Q |
249 |
ggctccaacaagggtgcacttcttttaaaagtgctgctacacttgcaacgtgtggacatgacattgatgtcccacttaacaagttgaagttgttgaa |
345 |
Q |
| |
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|||||||| | |||||| |||| ||||| || || |||| |||||| || || || | ||| ||||| ||||||| ||| ||||| ||| |||| |
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| T |
34962619 |
ggctccaatcactatgcactcctttcaaaagcgccgcgacacctgcaacatgagggcacgccatagatgttccacttatcaaattgaatttgctgaa |
34962715 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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