View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_12 (Length: 348)
Name: NF2258_1D_low_12
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35518278 - 35517980
Alignment:
| Q |
1 |
ttaattcttcactcataatgttactaataaaatatggaaggatagtaagttgttttgacacgagccatggatggtagaggatgtggtaaaaaagcgtttt |
100 |
Q |
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| T |
35518278 |
ttaattcttcactcataatgttactaataaaatatggaatgatagtaagttgttttgacacgagccatggatggtagaggatgtggtaaaaaagcgtttt |
35518179 |
T |
|
| Q |
101 |
agtaggttgtttaatct------ggagaaaaatgtttatgtgaatgatatggtgttaggtaaaggatttgaggaaggttgttagagttggagaaaaaagt |
194 |
Q |
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| T |
35518178 |
agtaggttgtttaatctagccttggagaaaaatgtttatgtgaatgatatggtgttacgtaaaggatttgaggaaggttgttagagttggagaaaaaagt |
35518079 |
T |
|
| Q |
195 |
tgtttgcatggga-----agttgagttggtggaggattgtaaagttatattgtctaacatttctacataacttgtcaaaatctcttctagccacttggt |
288 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35518078 |
tgtttgcatgggaggttgagttgagttggtggaggattgtaaagttatattgtctaacatttctacataacttgtcaaaatctcttctagccacttggt |
35517980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 35524360 - 35524404
Alignment:
| Q |
281 |
cacttggtatacccattgatcattgtagaaggacaatctttgaag |
325 |
Q |
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| T |
35524360 |
cacttggtatactcattgatcattgtagaaggacaatctttgaag |
35524404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 4095684 - 4095640
Alignment:
| Q |
281 |
cacttggtatacccattgatcattgtagaaggacaatctttgaag |
325 |
Q |
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| T |
4095684 |
cacttggtatactcattgatcattgtagaagtacaatctttgaag |
4095640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 4716683 - 4716639
Alignment:
| Q |
281 |
cacttggtatacccattgatcattgtagaaggacaatctttgaag |
325 |
Q |
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|||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
4716683 |
cacttggtatactcattgatcattgtagaagtacaatctttgaag |
4716639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 250
Target Start/End: Complemental strand, 28827206 - 28827075
Alignment:
| Q |
120 |
agaaaaatgtttatgtgaatgatatggtgttaggtaaaggatttgaggaaggttgttagagttggagaaaaaagttgtttgcatgggaagttgagttg-g |
218 |
Q |
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||||||||||||||||||| | |||| |||||||||| || | |||| |||||||| ||||||||||| ||| || ||| ||||| ||| ||||| |
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| T |
28827206 |
agaaaaatgtttatgtgaagggtatgatgttaggtaatggtatagagggaggttgttggagttggagaataaatttatttatttgggaggttcagttgtt |
28827107 |
T |
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| Q |
219 |
tggaggattgtaaagttatattgtctaacatt |
250 |
Q |
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||||||| |||| ||| |||||||||||||| |
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| T |
28827106 |
tggaggagtgtagggttttattgtctaacatt |
28827075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 41617791 - 41617747
Alignment:
| Q |
281 |
cacttggtatacccattgatcattgtagaaggacaatctttgaag |
325 |
Q |
| |
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|||||| ||||| |||||||||||||||||| |||| |||||||| |
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| T |
41617791 |
cacttgttatactcattgatcattgtagaagtacaacctttgaag |
41617747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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