View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_13 (Length: 340)
Name: NF2258_1D_low_13
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 23333523 - 23333847
Alignment:
| Q |
1 |
agggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333523 |
agggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctg |
23333622 |
T |
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| Q |
101 |
cataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
23333623 |
cataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggt |
23333722 |
T |
|
| Q |
201 |
aaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
23333723 |
aaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaat |
23333822 |
T |
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| Q |
301 |
tttatcggtcaacttcgtgatgtcc |
325 |
Q |
| |
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|||||||||||||||||| |||||| |
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| T |
23333823 |
tttatcggtcaacttcgttatgtcc |
23333847 |
T |
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