View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_17 (Length: 298)
Name: NF2258_1D_low_17
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_17 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 446569 - 446866
Alignment:
| Q |
1 |
caatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaattaata |
100 |
Q |
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| T |
446569 |
caatcttattccagcaatcacatttgtaatagcagcctttgcagggtaaatttctaactacactcaacctatttttgttgccccatcaaattaattaata |
446668 |
T |
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| Q |
101 |
tgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgt |
200 |
Q |
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| T |
446669 |
tgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgt |
446768 |
T |
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| Q |
201 |
ccatcgcattgttgaagggtccaaaacttttaaatgcagaaaatatatcttcaaaatcaatcatggccacaacctcgacaagtgatgagaacaactgg |
298 |
Q |
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| T |
446769 |
ccatcgcattgttaaagggtccaaaacttttaaatgcagaaaatatatcttcaaaatcaatcatggccacaacctcgacaagtgatgagaacaactgg |
446866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 101 - 275
Target Start/End: Original strand, 467679 - 467853
Alignment:
| Q |
101 |
tgaaattgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgt |
200 |
Q |
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| T |
467679 |
tgaaattgattatattacagaatggaaaaagtgaatattcgaagtataagaactatagccaaaatagtggggacaattatatgtgtaagtggagcagtgt |
467778 |
T |
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| Q |
201 |
ccatcgcattgttgaagggtccaaaacttttaaatgcagaaaatatatcttcaaaatcaatcatggccacaacct |
275 |
Q |
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| T |
467779 |
caattgcattgttgaagggtccaaaactactaaatgcagataagatactttcaaaatcaatcatggccacaacct |
467853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 474723 - 474891
Alignment:
| Q |
111 |
tatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgcatt |
210 |
Q |
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| T |
474723 |
tatattacagaatggagaaagtcaacattcgaagtttgagaactatagccaaaatagtagggacattaatatgtgtttgtggagcattgtctatagcatt |
474822 |
T |
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| Q |
211 |
gttgaagggtccaaaacttttaaatgcagaaaata---tatcttcaaaatcaatcatggccacaacctc |
276 |
Q |
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| T |
474823 |
gttgaagggtccaaagctactaaatgcagaaaacatactacctacaaaatctatcatggccataacctc |
474891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 109 - 267
Target Start/End: Original strand, 480068 - 480229
Alignment:
| Q |
109 |
attatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgca |
208 |
Q |
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| T |
480068 |
attatattacagaatggagaaagtaaatattcgaagtatgagaactatagccaaaatagtggggacagtgatatgtataagtggagcagtatctattgca |
480167 |
T |
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| Q |
209 |
ttgttgaagggtccaaa---acttttaaatgcagaaaatatatcttcaaaatcaatcatggc |
267 |
Q |
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| T |
480168 |
ttgttgaagggtccaaagctactaataaatgcagagaacataacttcaaagtcaatcatggc |
480229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 455399 - 455540
Alignment:
| Q |
105 |
attgattatattacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggag------caat |
198 |
Q |
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| T |
455399 |
attgaatatattacagaatggagaaagtgaatattcaaagtttgagaactatagccaaaatagttgggacaatgatatgtgttactggagcagtgtcact |
455498 |
T |
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| Q |
199 |
gtccatcgcattgttgaagggtccaaaacttttaaatgcaga |
240 |
Q |
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| T |
455499 |
gtccatgacattattgaagggtccaaaactactaaatgcaga |
455540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 479947 - 479987
Alignment:
| Q |
9 |
ttccagcaatcacatttgtaatagcagcctttgcagggtaa |
49 |
Q |
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| T |
479947 |
ttccagcagtcacatttgtaatagcagcctttgtagggtaa |
479987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 115 - 275
Target Start/End: Complemental strand, 27491647 - 27491487
Alignment:
| Q |
115 |
ttacagaatggagaaattcaatattcgaagtatgagaactatagccaaaatagtgggaacaataatatgtgtttgtggagcaatgtccatcgcattgttg |
214 |
Q |
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| T |
27491647 |
ttacagaatggagcaagtgaatattagaagtttgagaactatagccaaaataataggaacaattataggtgtaagtggagcagtgttcattgcactattg |
27491548 |
T |
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| Q |
215 |
aagggtccaaaacttttaaatgcagaaaatatatcttcaaaatcaatcatggccacaacct |
275 |
Q |
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| T |
27491547 |
aagggtccaaagctgctaaatgcagaaagcataacttcaaaatcaatcattggcacaacct |
27491487 |
T |
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