View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_21 (Length: 282)
Name: NF2258_1D_low_21
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_21 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 11619902 - 11619644
Alignment:
| Q |
24 |
cattgcatcagcatgttactgtctataaatatgacaaaatcataagtcatgattatttgagcatcatataaccagctactcctatttcttactataaata |
123 |
Q |
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| T |
11619902 |
cattgcatcagcatgttactgtctataaatatgacaaaatcataagtcatgatcatttgagcatcatataaccagctactcctatttcttactataaata |
11619803 |
T |
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| Q |
124 |
gtgcttggactaggactagtatttgttattttggaaattttagttgcacaaaacaagcaattgatgttgatactaatgatttttatttgtttcctaaaca |
223 |
Q |
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| T |
11619802 |
gtgcttggactaggactagtatttgttattttggaaattttagttgcacaaaacaagcaattgatgttgatactaatgatttttatttgtttcctaaaca |
11619703 |
T |
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| Q |
224 |
atgtttactcagcaattattagtctgtccctatttattttgtttctctaggaatctgaa |
282 |
Q |
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| T |
11619702 |
atgtttactcagcaattattagtctgtccctatttattttgtttctctaggaatctgaa |
11619644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 11643582 - 11643539
Alignment:
| Q |
29 |
catcagcatgttactgtctataaatatgacaaaatcataagtca |
72 |
Q |
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| T |
11643582 |
catcagcatattactgtctataaatacgacaaaatcaaaagtca |
11643539 |
T |
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