View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_22 (Length: 282)
Name: NF2258_1D_low_22
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 35524146 - 35524404
Alignment:
| Q |
1 |
attaagtctctcaccggtggaccacgaatgaaatgcagttggatttaatcaagggaccaggttcattcaaattaaatatgagagcatttatactctttcg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524146 |
attaagtccctcaccggtggaccacgaatgaaatgcagttggatttaatcaagggaccaggttcattcaaattaaatatgagagcatttatactctttca |
35524245 |
T |
|
| Q |
101 |
cacacaatctgtctcacctcttcctctctccttcctctgttacatttcatcgctgctacacccttcattttttctcagaattcgatttactaaacaactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524246 |
cacacaatctgtctcacctcttcctctctccttcctcagttacatttcatcactgctacacccttcattttttctcagaattcgatttactaaacaactt |
35524345 |
T |
|
| Q |
201 |
cataaatcatacaacacttggtatactcattgatcattgtagaaggacaatctttgaag |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35524346 |
cataaatcatacaacacttggtatactcattgatcattgtagaaggacaatctttgaag |
35524404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4095898 - 4095640
Alignment:
| Q |
1 |
attaagtctctcaccggtggaccacgaatgaaatgcagttggatttaatcaagggaccaggttcattcaaattaaatatgagagcatttatactctttcg |
100 |
Q |
| |
|
||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||| | |||||||||| ||||||||||||||||| |||| |||| |
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| T |
4095898 |
attaaatccctcaccgatggaccacgaatgaaatgcagttgaatttaatcaagggaccggattcattcaaaataaatatgagagcatttgtactttttca |
4095799 |
T |
|
| Q |
101 |
cacacaatctgtctcacctcttcctctctccttcctctgttacatttcatcgctgctacacccttcattttttctcagaattcgatttactaaacaactt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4095798 |
cacacaatctatctcacctcttcctctctccttcctctgatacatttcatcaccgctacacccttcattttttctcagaattcgatttactaaacaactt |
4095699 |
T |
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| Q |
201 |
cataaatcatacaacacttggtatactcattgatcattgtagaaggacaatctttgaag |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4095698 |
cataaatcatacaacacttggtatactcattgatcattgtagaagtacaatctttgaag |
4095640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 41618005 - 41617747
Alignment:
| Q |
1 |
attaagtctctcaccggtggaccacgaatgaaatgcagttggatttaatcaagggaccaggttcattcaaattaaatatgagagcatttatactctttcg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |
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| T |
41618005 |
attaagtctctcaccagtggaccacgaatgaaatgcagttggatttaatcaagggaccagattcattcaaaataaatatgagagcatttatactttttca |
41617906 |
T |
|
| Q |
101 |
cacacaatctgtctcacctcttcctctctccttcctctgttacatttcatcgctgctacacccttcattttttctcagaattcgatttactaaacaactt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41617905 |
cacacaatctatctcacctcttcctctctccttcctctgatacatttcatcaccgctacacccttcattttttcttagaattcgatttactaaacaactt |
41617806 |
T |
|
| Q |
201 |
cataaatcatacaacacttggtatactcattgatcattgtagaaggacaatctttgaag |
259 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
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|
| T |
41617805 |
cataaatcatacaacacttgttatactcattgatcattgtagaagtacaacctttgaag |
41617747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 4716887 - 4716639
Alignment:
| Q |
11 |
tcaccggtggaccacgaatgaaatgcagttggatttaatcaagggaccaggttcattcaaattaaatatgagagcatttatactctttcgcacacaatct |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
4716887 |
tcactggtggaccacgaatgaaatgcagttggatttaatcaagggaccagattcattcaaaataaatatgagagcatttatactttttcacacacaatct |
4716788 |
T |
|
| Q |
111 |
gtctcacctcttcctctctccttcctctgttacatttcatcgctgctacacccttcattttttctcagaattcgatttactaaacaacttcataaatcat |
210 |
Q |
| |
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|||||||||||||||||| |||||| || ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4716787 |
atctcacctcttcctctcttcttcctatgatacatttcatcaccgctacacctttcattttttctcagaattcgatttactaaacaacttcataaatcat |
4716688 |
T |
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| Q |
211 |
acaacacttggtatactcattgatcattgtagaaggacaatctttgaag |
259 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4716687 |
acaacacttggtatactcattgatcattgtagaagtacaatctttgaag |
4716639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 53777845 - 53777888
Alignment:
| Q |
1 |
attaagtctctcaccggtggaccacgaatgaaatgcagttggat |
44 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | ||||||| |
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|
| T |
53777845 |
attaagtctctcaccggtggaccacgaaggaaataccgttggat |
53777888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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