View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2258_1D_low_24 (Length: 279)

Name: NF2258_1D_low_24
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2258_1D_low_24
NF2258_1D_low_24
[»] chr3 (7 HSPs)
chr3 (152-279)||(45395432-45395560)
chr3 (19-57)||(23566889-23566927)
chr3 (62-124)||(23566949-23567011)
chr3 (62-122)||(39737784-39737844)
chr3 (19-57)||(39737724-39737762)
chr3 (73-121)||(785835-785883)
chr3 (202-268)||(50470355-50470421)
[»] scaffold0064 (1 HSPs)
scaffold0064 (151-279)||(19923-20052)
[»] chr6 (3 HSPs)
chr6 (152-279)||(17922863-17922991)
chr6 (73-117)||(604984-605028)
chr6 (73-122)||(8700890-8700939)
[»] chr5 (5 HSPs)
chr5 (152-268)||(3623478-3623594)
chr5 (62-124)||(39121894-39121956)
chr5 (19-57)||(39121834-39121872)
chr5 (64-116)||(14393983-14394035)
chr5 (76-124)||(20983543-20983591)
[»] chr4 (9 HSPs)
chr4 (13-151)||(38147357-38147519)
chr4 (62-124)||(12639781-12639843)
chr4 (19-57)||(12639721-12639759)
chr4 (62-116)||(28103806-28103860)
chr4 (19-57)||(28103882-28103920)
chr4 (76-124)||(43012754-43012802)
chr4 (62-117)||(917683-917738)
chr4 (23-54)||(918651-918682)
chr4 (78-124)||(12629834-12629880)
[»] chr2 (8 HSPs)
chr2 (19-123)||(4329599-4329720)
chr2 (60-124)||(29770766-29770830)
chr2 (62-124)||(39865358-39865420)
chr2 (19-57)||(39865298-39865336)
chr2 (62-121)||(4330167-4330226)
chr2 (19-57)||(29770850-29770888)
chr2 (73-123)||(9074598-9074648)
chr2 (64-136)||(30674485-30674557)
[»] chr7 (6 HSPs)
chr7 (72-127)||(28750990-28751045)
chr7 (62-124)||(31167014-31167076)
chr7 (19-57)||(31166954-31166992)
chr7 (23-57)||(21971617-21971651)
chr7 (73-123)||(38916457-38916507)
chr7 (62-103)||(27596002-27596043)
[»] chr8 (5 HSPs)
chr8 (62-120)||(26759207-26759265)
chr8 (72-127)||(308301-308356)
chr8 (19-57)||(26759287-26759325)
chr8 (19-57)||(146719-146757)
chr8 (64-116)||(186682-186734)
[»] chr1 (1 HSPs)
chr1 (73-124)||(23269946-23269997)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 45395560 - 45395432
Alignment:
Q  152 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  45395560 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgttattaccatccttggatatttttctttccattaactaattatattctct 45395461  T
Q  252 caccccatgttttcc-ttccaccgcttga 279  Q
    || |||||||||||| |||||||||||||    
T  45395460 catcccatgttttcctttccaccgcttga 45395432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 23566889 - 23566927
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23566889 aaagagtattgaatatagcttttattatttttaattagt 23566927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 23566949 - 23567011
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||||||||||||| ||  ||||||||| | |||||||| ||||||||||||||||||||    
T  23566949 tgagatgaattaagtgatattcatttatttaattactatttattgttccttatccagtgcccc 23567011  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 39737784 - 39737844
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcc 122  Q
    ||||||||||||| | ||||| ||||||||| | |||||||| ||||||||||||||||||    
T  39737784 tgagatgaattaaataagatctatttatttaattactatttattgttccttatccagtgcc 39737844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39737724 - 39737762
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  39737724 aaagaatattgaatatagcttttattatttttaattagt 39737762  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 785835 - 785883
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatccagtgc 121  Q
    |||||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  785835 aagtgagatccatttatttattgcctatttaatgttccttattcagtgc 785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Complemental strand, 50470421 - 50470355
Alignment:
Q  202 ctattacaatccttggatgtttttctttccattaattaattatattctctcaccccatgttttcctt 268  Q
    ||||||| ||| |||||||||| | ||||| |||| |||||  |||||||| |||||||||||||||    
T  50470421 ctattaccatctttggatgtttatatttccgttaactaattgaattctctctccccatgttttcctt 50470355  T

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Target: scaffold0064 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 151 - 279
Target Start/End: Complemental strand, 20052 - 19923
Alignment:
Q  151 tggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctc 250  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||||||||||||| |||||||||||    
T  20052 tggaaaatgctttattacacgacataaaccatgcacgagaaagccacgatgttattatcatccttggatgtttttctttccattaattgattatattctc 19953  T
Q  251 tcaccccatgttttcc-ttccaccgcttga 279  Q
    ||| |||||||||||| |||||||||||||    
T  19952 tcatcccatgttttcctttccaccgcttga 19923  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 17922991 - 17922863
Alignment:
Q  152 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||    
T  17922991 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattaccacccttggatgtttttctttccattagctaattatattctct 17922892  T
Q  252 caccccatgtttt--ccttccaccgcttga 279  Q
    || ||||||||||  | |||||||||||||    
T  17922891 ca-cccatgtttttcctttccaccgcttga 17922863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 605028 - 604984
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatcca 117  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||    
T  605028 aagtgagatccatttatttattgcctatttattgttccttatcca 604984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8700939 - 8700890
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatccagtgcc 122  Q
    |||||||||| || ||||||||| ||||||| |||||||||||| |||||    
T  8700939 aagtgagatccatctatttattgcctatttattgttccttatccggtgcc 8700890  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 152 - 268
Target Start/End: Complemental strand, 3623594 - 3623478
Alignment:
Q  152 ggaaaatgctttattacacgacataaaccatgcacgagaaacccacgatgctattacaatccttggatgtttttctttccattaattaattatattctct 251  Q
    |||||||||||||||  |||| | |||||||||||||||| ||||| | |||||||| | |||||||||||||| |||||||||| ||||||||||||||    
T  3623594 ggaaaatgctttatttgacgatagaaaccatgcacgagaagcccacaaagctattaccacccttggatgtttttatttccattaactaattatattctct 3623495  T
Q  252 caccccatgttttcctt 268  Q
    |||||||| ||||||||    
T  3623494 caccccatattttcctt 3623478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 39121894 - 39121956
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    |||||| |||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  39121894 tgagataaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 39121956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39121834 - 39121872
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  39121834 aaagagtattgaatataacttttattatttttaattagt 39121872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 14394035 - 14393983
Alignment:
Q  64 agatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 116  Q
    |||| ||| |||||||||| ||||||||||||  |||||| ||||||||||||    
T  14394035 agataaatcaagtgagatccatttatttattgcttatttattgttccttatcc 14393983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 20983591 - 20983543
Alignment:
Q  76 tgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||| |||||||||||| ||||||| | || |||||||||||||||    
T  20983591 tgagatccatttatttattgtctatttattttttcttatccagtgcccc 20983543  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 38147519 - 38147357
Alignment:
Q  13 gacatcaaagagtattgaatatagcttttattatttttaattagtcgac-----------------tgagatgaattaagtgagatcaatttatttattg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||                 ||||||||||||||||||||| ||||||||||||    
T  38147519 gacatcaaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatccatttatttattg 38147420  T
Q  96 actatttactgttccttatccagtgccc-------ctggttaacattgcccaaattattaaat 151  Q
    ||||||||||||||||||||||||||||       | ||||| ||||||||||||||||||||    
T  38147419 actatttactgttccttatccagtgcccgaaagcaccggttagcattgcccaaattattaaat 38147357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 12639781 - 12639843
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    |||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||    
T  12639781 tgaggtgaattaagtgagatccatttatttattgcctatttattgttccttatccagtacccc 12639843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 12639721 - 12639759
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12639721 aaagagtattgaatatagcttttattatttttaattagt 12639759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 28103860 - 28103806
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 116  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| ||||||||||||    
T  28103860 tgagatgaattaagtgagatccatttatttaatgattatttattgttccttatcc 28103806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 28103920 - 28103882
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28103920 aaagagtattgaatatagcttttattatttttaattagt 28103882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 43012802 - 43012754
Alignment:
Q  76 tgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  43012802 tgagatccatttatttattgtctatttattgttccttatccagtgcccc 43012754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 917738 - 917683
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatcca 117  Q
    ||||||||||||| | ||||  |||||||||||||||||||| ||||| |||||||    
T  917738 tgagatgaattaacttagattcatttatttattgactatttattgttctttatcca 917683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 54
Target Start/End: Complemental strand, 918682 - 918651
Alignment:
Q  23 agtattgaatatagcttttattatttttaatt 54  Q
    ||||||||||||||||||||||||||||||||    
T  918682 agtattgaatatagcttttattatttttaatt 918651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 12629880 - 12629834
Alignment:
Q  78 agatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  12629880 agatctattcatttattgtctatttaatgttccttatccagtgcccc 12629834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 4329720 - 4329599
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagtcgac-----------------tgagatgaattaagtgagatcaatttatttattgactatt 101  Q
    ||||||||||||||||||||||||||||||||||||||| |||                 ||||||||||||||||||||| ||||||||||| ||||||    
T  4329720 aaagagtattgaatatagcttttattatttttaattagttgacatatattacactttaattgagatgaattaagtgagatctatttatttattaactatt 4329621  T
Q  102 tactgttccttatccagtgccc 123  Q
    ||||||||||||||||||||||    
T  4329620 tactgttccttatccagtgccc 4329599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 29770830 - 29770766
Alignment:
Q  60 actgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  29770830 actgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 29770766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 39865358 - 39865420
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  39865358 tgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 39865420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 39865298 - 39865336
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39865298 aaagagtattgaatatagcttttattatttttaattagt 39865336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 4330167 - 4330226
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgc 121  Q
    ||||||||||||||||||||| ||||||||| ||  |||| | |||||||||||||||||    
T  4330167 tgagatgaattaagtgagatccatttatttaatgcatattaattgttccttatccagtgc 4330226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 29770888 - 29770850
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  29770888 aaagagtattgattatagcttttattatttttaattagt 29770850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 9074648 - 9074598
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatccagtgccc 123  Q
    |||||||||| |||||||||||| ||||||| ||||| |||||| ||||||    
T  9074648 aagtgagatccatttatttattgtctatttattgttctttatccggtgccc 9074598  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 30674485 - 30674557
Alignment:
Q  64 agatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccctggttaacattg 136  Q
    |||| ||| |||||||||| ||||||||||||  |||| | ||||| |||||| ||||||| ||||| |||||    
T  30674485 agataaatcaagtgagatctatttatttattgcttattaattgttctttatccggtgcccccggttagcattg 30674557  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 28750990 - 28751045
Alignment:
Q  72 taagtgagatcaatttatttattgactatttactgttccttatccagtgcccctgg 127  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  28750990 taagtgagatccatttatttattgcctatttattgttccttatccagtgcccctgg 28751045  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 31167014 - 31167076
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    ||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||    
T  31167014 tgagatgaattaagtgagattcatttatttaattactatttattgttccttatccagtgcccc 31167076  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 31166954 - 31166992
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31166954 aaagagtattgaatatagcttttattatttttaattagt 31166992  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 21971651 - 21971617
Alignment:
Q  23 agtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||||||||||||||||||||    
T  21971651 agtattgaatatagcttttattatttttaattagt 21971617  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 38916457 - 38916507
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatccagtgccc 123  Q
    |||||||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  38916457 aagtgagatccatttatttattgtctatttattgttctttatccagtgccc 38916507  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 27596043 - 27596002
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactattta 103  Q
    ||||||||||||||||||||| |||||||||||| |||||||    
T  27596043 tgagatgaattaagtgagatccatttatttattggctattta 27596002  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 26759265 - 26759207
Alignment:
Q  62 tgagatgaattaagtgagatcaatttatttattgactatttactgttccttatccagtg 120  Q
    ||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||||    
T  26759265 tgagatgaattaagtgagatccatttatttaattactatttattgttccttatccagtg 26759207  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 308356 - 308301
Alignment:
Q  72 taagtgagatcaatttatttattgactatttactgttccttatccagtgcccctgg 127  Q
    ||||||||||| |||||||||||| ||||||| ||||| |||||| ||||||||||    
T  308356 taagtgagatccatttatttattgcctatttattgttcattatccggtgcccctgg 308301  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 26759325 - 26759287
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  26759325 aaagagtatttaatatagcttttattatttttaattagt 26759287  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 146757 - 146719
Alignment:
Q  19 aaagagtattgaatatagcttttattatttttaattagt 57  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  146757 aaagagtattgaatatagtttttattaattttaattagt 146719  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 186734 - 186682
Alignment:
Q  64 agatgaattaagtgagatcaatttatttattgactatttactgttccttatcc 116  Q
    |||| ||| |||||||||| |||||||||||  ||||||| ||||||||||||    
T  186734 agataaatcaagtgagatccatttatttattagctatttattgttccttatcc 186682  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 23269997 - 23269946
Alignment:
Q  73 aagtgagatcaatttatttattgactatttactgttccttatccagtgcccc 124  Q
    |||| ||||| ||| |||||||| ||||||| ||||||||||||||||||||    
T  23269997 aagtaagatctattcatttattgtctatttaatgttccttatccagtgcccc 23269946  T

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