View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_25 (Length: 273)
Name: NF2258_1D_low_25
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 12171197 - 12171428
Alignment:
| Q |
32 |
tggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaac |
131 |
Q |
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| T |
12171197 |
tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaac |
12171296 |
T |
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| Q |
132 |
tgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgt |
229 |
Q |
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| T |
12171297 |
tgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttat |
12171396 |
T |
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| Q |
230 |
tttcactggtgattctttcctatgatgtccat |
261 |
Q |
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| T |
12171397 |
tttcactggtgattatttcctatgatgtccat |
12171428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 12415625 - 12415856
Alignment:
| Q |
32 |
tggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtcaac |
131 |
Q |
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| T |
12415625 |
tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtcaac |
12415724 |
T |
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| Q |
132 |
tgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttcttgt |
229 |
Q |
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| T |
12415725 |
tgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttcttat |
12415824 |
T |
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| Q |
230 |
tttcactggtgattctttcctatgatgtccat |
261 |
Q |
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| T |
12415825 |
tttcactggtgattatttcctatgatgtccat |
12415856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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