View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_1D_low_30 (Length: 264)
Name: NF2258_1D_low_30
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_30 |
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| [»] chr8 (10 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 12176818 - 12177073
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
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| T |
12176818 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12176917 |
T |
|
| Q |
109 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12176918 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12177017 |
T |
|
| Q |
209 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
12177018 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaa |
12177073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 12421246 - 12421501
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |
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| T |
12421246 |
atgaacccagaactttcaaagccaaagggttgccttttgtataagaaactacattgtttgatatctcttcatatccctcattgggaaggatttttttgaa |
12421345 |
T |
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| Q |
109 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12421346 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctcctcctgtcaacacatgcttatctctg |
12421445 |
T |
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| Q |
209 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
12421446 |
gttgtcacaatgactctgctaccaactccaaggcaatcatgccctgctccaatcaa |
12421501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 12188139 - 12188394
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
12188139 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12188238 |
T |
|
| Q |
109 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
12188239 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12188338 |
T |
|
| Q |
209 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12188339 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaa |
12188394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 12432567 - 12432822
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccggc---ataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||| || ||| |
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| T |
12432567 |
atgaacccagaactttcaaagccaaagggttgccttctgtataagaaactacattgtttgatatctcctcatatccttcattgggaaggattttgttgaa |
12432666 |
T |
|
| Q |
109 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| | |||||||||| |||||||||| |
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| T |
12432667 |
agcattcaaactaaacaacctgatggagttttgagaattcattttctcaacttcatgaatttcgtcaattcctcctcccgtcaacacatacttatctctg |
12432766 |
T |
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| Q |
209 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12432767 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctgctccaatcaa |
12432822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 264
Target Start/End: Original strand, 9393984 - 9394239
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcctcatatccctcattgggaaagannnnnnngaa |
108 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||| |||| || ||| |
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| T |
9393984 |
atgaacccataactttcaaagccaaagagtcgccttttgcataagaaactacattatttgatatctcctcatacccctcattcggaacgattttgttgaa |
9394083 |
T |
|
| Q |
109 |
agcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctg |
208 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| |
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| T |
9394084 |
agcattcaaactgaacaacctgatggagttttgaaagttcatttccttaacttgaagaatttcgtcaatccctctgcctatcaacacatgcttatctctg |
9394183 |
T |
|
| Q |
209 |
gttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394184 |
gttgtcacaatttctctgctaccagctccaaggcaatcatgccctactccaatcaa |
9394239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 32633728 - 32633597
Alignment:
| Q |
133 |
ggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctacca |
232 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||| || || || ||||||||| |||||||| |
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| T |
32633728 |
ggagtttcgagagttcatttctttaacttgatgaattttgtcaattcctccactaaccagcacatgcttatcccttgtcgttacaatgactatgctacca |
32633629 |
T |
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| Q |
233 |
gctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
| |
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|||| || ||| ||| ||| ||||||||||| |
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| T |
32633628 |
tctcctagccaaccattcccgactccaatcaa |
32633597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 264
Target Start/End: Complemental strand, 13165338 - 13165211
Alignment:
| Q |
137 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
236 |
Q |
| |
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||||| |||||||| | |||||||| || |||||| ||||||||||| | ||| |||||||||||| || || |||||||||||| |||||||||||| |
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| T |
13165338 |
ttttgggagttcatcttcttaacttcataaatttcttcaattcctccacttatcagcacatgcttatccctagtcgtcacaatgactgtgctaccagctc |
13165239 |
T |
|
| Q |
237 |
caaggcaatcatgccctactccaatcaa |
264 |
Q |
| |
|
| | ||| |||| || ||||||||||| |
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| T |
13165238 |
ctaaccaaccatgtcccactccaatcaa |
13165211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 5571829 - 5571726
Alignment:
| Q |
137 |
ttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctc |
236 |
Q |
| |
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||||| |||||||| | |||||||| || |||||||||||||||||| | ||| |||||| ||||| || || |||||||||||| ||||||||| || |
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| T |
5571829 |
ttttgggagttcatcttcttaacttcataaatttcgtcaattcctccacttatcagcacatgtttatccctagtcgtcacaatgactatgctaccaggtc |
5571730 |
T |
|
| Q |
237 |
caag |
240 |
Q |
| |
|
|||| |
|
|
| T |
5571729 |
caag |
5571726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 264
Target Start/End: Original strand, 6310084 - 6310241
Alignment:
| Q |
107 |
aaagcattcaaactgaacaacctgatggagttttgagagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctc |
206 |
Q |
| |
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||||||||||| ||||| | | || ||| ||||| || ||||| | |||||||| || ||||| ||||| ||||| | |||| ||||||||||| | |
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| T |
6310084 |
aaagcattcaagctgaaaagctggagggaattttgggaattcatcttcttaacttcataaattttttcaatccctccacttatcaagacatgcttatccc |
6310183 |
T |
|
| Q |
207 |
tggttgtcacaatgactctgctaccagctccaaggcaatcatgccctactccaatcaa |
264 |
Q |
| |
|
| || |||||||||||| ||||||||| ||| || ||| |||| |||||||||||||| |
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|
| T |
6310184 |
tagtcgtcacaatgactgtgctaccagatcctagccaaccatgtcctactccaatcaa |
6310241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 264
Target Start/End: Complemental strand, 14405168 - 14405047
Alignment:
| Q |
143 |
gagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
242 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | ||| |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
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|
| T |
14405168 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
14405069 |
T |
|
| Q |
243 |
aatcatgccctactccaatcaa |
264 |
Q |
| |
|
|| |||| || ||||||||||| |
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| T |
14405068 |
aaccatgtcccactccaatcaa |
14405047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 42265724 - 42265792
Alignment:
| Q |
12 |
atgaaccaagaactttcaaagccaaagggttgccg---gcataagaaactacattgtttgatatctcct |
77 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
42265724 |
atgaacccagaactttcaaagccaaatggttgccttttgcataagaaactacattgtttgatatttcct |
42265792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 264
Target Start/End: Original strand, 13685 - 13806
Alignment:
| Q |
143 |
gagttcatttccttaacttgatgaatttcgtcaattcctccttctgtcaacacatgcttatctctggttgtcacaatgactctgctaccagctccaaggc |
242 |
Q |
| |
|
|||||||| | |||||||| || ||||| ||| |||||||| | ||| |||||||||||| || || ||||| |||||| ||||||||| ||| || | |
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| T |
13685 |
gagttcatcttcttaacttcataaattttgtcgattcctccacttatcagcacatgcttatccctcgtagtcacgatgactgtgctaccagatcctagcc |
13784 |
T |
|
| Q |
243 |
aatcatgccctactccaatcaa |
264 |
Q |
| |
|
|| |||| || ||||||||||| |
|
|
| T |
13785 |
aaccatgtcccactccaatcaa |
13806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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