View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_32 (Length: 253)
Name: NF2258_1D_low_32
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_32 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 67 - 253
Target Start/End: Complemental strand, 16438396 - 16438211
Alignment:
| Q |
67 |
tgttgggttgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgacgagtttgcgggttgattccatttttgg |
166 |
Q |
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| T |
16438396 |
tgttgggttagaagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgatgaggagtttgtgggttggttccatttttga |
16438297 |
T |
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| Q |
167 |
gggtttgttttgtttctctttctttatctgctctttgtcaccttcgatttggatcaatctccactgtcgctgccatttttgtgttga |
253 |
Q |
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| T |
16438296 |
gggtttgttttgtttttctttctttgtctac-ctttgttaccttcgatttggatccatctccaaagtcgctgccatttttgtgttga |
16438211 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 12351245 - 12351302
Alignment:
| Q |
25 |
gggtggttgttggtgtcggtaatacatggtggtaattgttggtgttgggttgggagtt |
82 |
Q |
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| T |
12351245 |
gggtggttgttggtgtcagtaatacatggtggtgattgttggtgttaggctgggagtt |
12351302 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 39041792 - 39041731
Alignment:
| Q |
75 |
tgggagtttgaattttaatggtgattttgagcgtggtggtgaattttggttgaagtgatgat |
136 |
Q |
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| T |
39041792 |
tgggagttggaatgttaattgtgatcttgtgtgtggtggtgaattttggttgtggtgatgat |
39041731 |
T |
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