View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_35 (Length: 244)
Name: NF2258_1D_low_35
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 16054345 - 16054107
Alignment:
| Q |
1 |
gtccaaaaagttattaaaagaagatacactcatagatgcttttaacattttcgatacattcaaagactattagtgaaaccga-tcgcatatttatggatc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16054345 |
gtccaaaaagttattaaaagaagatacactcatagatgcttttaacattttcgatacattcaaagactattagtgaaaccggctcgcatatttatggatc |
16054246 |
T |
|
| Q |
100 |
aaaatgaatgtttactttcaaaattatatttactttatctcattcacttgtttaaaggatgggttttcataatgttttccatgtctcatgacttgagtaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16054245 |
aaaatgaatgtttactttcaaaattatatttactttatctcattcacttgtttaaaggatgggttttcataatgttttccatgtctcatgacttgagtaa |
16054146 |
T |
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| Q |
200 |
gcatcttacacttgttatgttatttttattgaacaccaa |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16054145 |
gcatcttacacttgttatgttatttttattgaacaccaa |
16054107 |
T |
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