View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_36 (Length: 243)
Name: NF2258_1D_low_36
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 47709521 - 47709730
Alignment:
| Q |
23 |
acaaattaccctttactttaactagtttataatttaatgtaaaagcaactatatgtaaggtttaattactcggtccatatctaaactatttctaatcaga |
122 |
Q |
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| T |
47709521 |
acaaattaccctttactttaactagtttataatttaatgtaaaagcaactatatgtaaggtttaattactcggtccatatctaaactatttctaatcaga |
47709620 |
T |
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| Q |
123 |
tatctgaacttgtaattgagttcctgaattttagtcaagatatctgaacttttacataatttacgatcaaaacaggcagagtaattaaacctactataaa |
222 |
Q |
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| T |
47709621 |
tatctgaacttgtaattgagttcctgaattttagtcaagatatctgaacttttacataatttacgatcaaaacaggcagagtaattaaacctactataaa |
47709720 |
T |
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| Q |
223 |
tgttattcat |
232 |
Q |
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|||||||||| |
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| T |
47709721 |
tgttattcat |
47709730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 16560915 - 16560851
Alignment:
| Q |
23 |
acaaattaccctttactttaactagtttataatttaatgtaaaagcaactatatgtaaggtttaat |
88 |
Q |
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|||||||| |||| |||| ||||||||| | ||||||||||||||||||| ||||||||||||||| |
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| T |
16560915 |
acaaattatccttcactt-aactagtttgttatttaatgtaaaagcaactttatgtaaggtttaat |
16560851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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