View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_39 (Length: 237)
Name: NF2258_1D_low_39
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_39 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 40942947 - 40943175
Alignment:
| Q |
9 |
attctaggtaccaccacacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatg |
108 |
Q |
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| T |
40942947 |
attctaggtaccaccacacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatg |
40943046 |
T |
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| Q |
109 |
aatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaggcaatgaaaggcagtca |
208 |
Q |
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| T |
40943047 |
aatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaagcaatgaaaggcagtca |
40943146 |
T |
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| Q |
209 |
ccttgatgaggtgaagcggatggtggagg |
237 |
Q |
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| T |
40943147 |
cttggatgaagtgaaacgtatggtggagg |
40943175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 40970042 - 40970235
Alignment:
| Q |
9 |
attctaggtaccaccacacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatg |
108 |
Q |
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| T |
40970042 |
attctaggtaccaccacacaacaaaattaaggaacattaattattatcaattaagatatggaaacaatatcagcagctatcacaaaaaacagtgccaatg |
40970141 |
T |
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| Q |
109 |
aatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaggcaatgaaagg |
202 |
Q |
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| T |
40970142 |
aatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaagcaatgaaagg |
40970235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 40956259 - 40956494
Alignment:
| Q |
9 |
attctaggtaccaccacacaacaaaattaaggaacattaattattat------caat-taagat-atggaaacaatatcagcagctatcacaaaaaacag |
100 |
Q |
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| T |
40956259 |
attctagctaccaccactcaacaaa-ttaagcaacattaattactattagtatcaatataagatcatggaaacaatatcagcagctatcacaaaaaacag |
40956357 |
T |
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| Q |
101 |
tgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaggcaatgaaa |
200 |
Q |
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| T |
40956358 |
tgccaatgaatcattctgtttgattcatgctaagaataataacatgaaagtgaatgaagctgatcctttgaattggggtgtggcagctgaagcaatgaaa |
40956457 |
T |
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| Q |
201 |
ggcagtcaccttgatgaggtgaagcggatggtggagg |
237 |
Q |
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| T |
40956458 |
ggcagtcacatagatgaagtgaaacgtatggtggagg |
40956494 |
T |
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