View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_1D_low_40 (Length: 235)
Name: NF2258_1D_low_40
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 229
Target Start/End: Original strand, 4260992 - 4261199
Alignment:
| Q |
22 |
ccgatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaat |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
4260992 |
ccgatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagtactgattttggatgtggaaaaccaaaaaaagttgaaatggtttcaat |
4261091 |
T |
|
| Q |
122 |
agatagaactggtgctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcg |
221 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4261092 |
agatagaactggtgctttttgtctttctgatagtagaaatggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaagcttttgcttcg |
4261191 |
T |
|
| Q |
222 |
ctctttgt |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
4261192 |
ctctttgt |
4261199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 4289187 - 4288978
Alignment:
| Q |
20 |
gaccgatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289187 |
gaccgatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttca |
4289088 |
T |
|
| Q |
120 |
atagatagaactggtgctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgctt |
219 |
Q |
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|
||||||||||||||||| |||| |||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
4289087 |
atagatagaactggtgccttttgtctttctgattgtagaaagggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaatcttttgctt |
4288988 |
T |
|
| Q |
220 |
cgctctttgt |
229 |
Q |
| |
|
|||||||||| |
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|
| T |
4288987 |
cgctctttgt |
4288978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 4297778 - 4297573
Alignment:
| Q |
24 |
gatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatag |
123 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
4297778 |
gatgttaaaacaattggtactgctggttcacctaaatttgaggtttatagtactgattttggatgtggaaaaccaaagaaagttgaaatggtttctatag |
4297679 |
T |
|
| Q |
124 |
atagaactggtgctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgct |
223 |
Q |
| |
|
|||||| |||||| |||| |||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297678 |
atagaattggtgccttttgtctttctgattgtagaaagggtgatggtgttgagataggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgct |
4297579 |
T |
|
| Q |
224 |
ctttgt |
229 |
Q |
| |
|
|||||| |
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|
| T |
4297578 |
ctttgt |
4297573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 4284472 - 4284279
Alignment:
| Q |
36 |
attggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtg |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4284472 |
attggtgctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccaaaaaaagttgaaatggtttcaatagatagaactggtg |
4284373 |
T |
|
| Q |
136 |
ctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgctctttgt |
229 |
Q |
| |
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| |||| |||||| || ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
4284372 |
ccttttgtctttctgactgtagaaatggtgatggtgttgagataggtttcgtgtctaactaaaaagcaatggaagtttttgcttcgctctttgt |
4284279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 229
Target Start/End: Original strand, 4266540 - 4266745
Alignment:
| Q |
24 |
gatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatag |
123 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4266540 |
gatgttaaaacaactggtgctgctggttcacctaaatttgaggtttatagtactgactttggttgtggaaaaccaaagaaagttgaaatggtttctatag |
4266639 |
T |
|
| Q |
124 |
atagaactggtgctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtctaacaaaaaagcaatggaagcttttgcttcgct |
223 |
Q |
| |
|
||||||||||||||| || | ||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
4266640 |
atagaactggtgcttattgtgtttcggatagtagtaatggtgatggtgttgagataggttttgtgtctacgaaaaaagcaatggaagcctttgcttctct |
4266739 |
T |
|
| Q |
224 |
ctttgt |
229 |
Q |
| |
|
|||||| |
|
|
| T |
4266740 |
ctttgt |
4266745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 229
Target Start/End: Complemental strand, 4255479 - 4255273
Alignment:
| Q |
24 |
gatgttaaaatgattggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatag |
123 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||| |
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| T |
4255479 |
gatgttaaaacaattggttctgctggttcacctaaatttgaggtttatagtactgattttggttgtggaaaaccgaagaaagtcgaaattgtttctataa |
4255380 |
T |
|
| Q |
124 |
atagaactggtgctttttctctttcggatagtagaaatggtgatggtgttgagatgggttttgtgtcta-acaaaaaagcaatggaagcttttgcttcgc |
222 |
Q |
| |
|
||| ||||||||| |||| ||||| ||| ||||||||||||||||||||||||| || || |||| || | ||||||||||||||||| ||||||| | |
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|
| T |
4255379 |
ataaaactggtgccttttgtctttaagattgtagaaatggtgatggtgttgagataggattcgtgtttacaaaaaaaagcaatggaagcctttgcttttc |
4255280 |
T |
|
| Q |
223 |
tctttgt |
229 |
Q |
| |
|
||||||| |
|
|
| T |
4255279 |
tctttgt |
4255273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 4257731 - 4257616
Alignment:
| Q |
36 |
attggtgctgctggttcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaa---agttgaaatggtttcaatagatagaactg |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
4257731 |
attggtgctgctggttcacctaaatttgaggattatagtactgattttggttgtggaaaaccaaagaaattagttgaaatggtttctatagatagaactg |
4257632 |
T |
|
| Q |
133 |
gtgctttttctctttc |
148 |
Q |
| |
|
||| |||| |||||| |
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|
| T |
4257631 |
gtgacttttgtctttc |
4257616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 171
Target Start/End: Complemental strand, 4977791 - 4977671
Alignment:
| Q |
51 |
tcacctaaatttgaggtttatagcactgattttggttgtggaaaaccaaagaaagttgaaatggtttcaatagatagaactggtgctttttctctttcgg |
150 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| || || ||||| ||||||||||| | ||| || |||| ||| || |||||||||||||||| |
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|
| T |
4977791 |
tcacctagatttgaggtttatagttttgattttggatggggtaaacctaagaaagttgatgttacttctattgataaaacaggagctttttctctttcgg |
4977692 |
T |
|
| Q |
151 |
atagtagaaatggtgatggtg |
171 |
Q |
| |
|
| | ||||||| |||||||| |
|
|
| T |
4977691 |
agaatagaaataatgatggtg |
4977671 |
T |
|
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