View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_49 (Length: 219)
Name: NF2258_1D_low_49
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_49 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 27714313 - 27714103
Alignment:
| Q |
9 |
agaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgattttgca |
108 |
Q |
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| T |
27714313 |
agaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttatcccacaattgcccatgaattcttgagaaaacatgacattgattttgca |
27714214 |
T |
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| Q |
109 |
tcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaaaaacgttg |
208 |
Q |
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| T |
27714213 |
tcaagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaagaacgtcg |
27714114 |
T |
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| Q |
209 |
ttgctaacaat |
219 |
Q |
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| T |
27714113 |
ttgctaacaat |
27714103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 27697801 - 27697991
Alignment:
| Q |
10 |
gaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgattttgcat |
109 |
Q |
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| T |
27697801 |
gaaatagcatgtattcgtctaggaaatgtcaatgttatccctgttacttgtccttccattgcccgcgaattcttgagaaaacatgatgctgattttgcat |
27697900 |
T |
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| Q |
110 |
caagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
200 |
Q |
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| T |
27697901 |
caagaccaataaccatggctagtgatatcatttccaatggctacgtgacctcaattcttgtaccctatggcgaacaatggaaaaagatgaa |
27697991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 26408790 - 26408980
Alignment:
| Q |
10 |
gaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgattttgcat |
109 |
Q |
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| T |
26408790 |
gaaatagcatgtatccgtctaggaaatgtccatattattccggtaacatgtcctaccattgctcgtgaaatcttgagaaaacatgatgctgattttgcat |
26408889 |
T |
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| Q |
110 |
caagaccagtaagcatggccagtgatatcatctccaatggatacttgacctcagtttttgtaccctttggcgaacagtggaaaaagatgaa |
200 |
Q |
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| T |
26408890 |
caagaccaacaaccatggccagtggtataatctccagtggctacttgacctctgctattgcaccctttggcgaacaatggaaaaagatgaa |
26408980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 27727549 - 27727470
Alignment:
| Q |
10 |
gaaatagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaa |
89 |
Q |
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| T |
27727549 |
gaaatagcgtgtatccgcctaggaaatgtccatgttattcctgttacctgtcccaccattgcccttgaattcttgagaaa |
27727470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 27747145 - 27747018
Alignment:
| Q |
14 |
tagcatgtatccgcctaggaaatgtccatgttatccccgttacttgtcccacaattgcccatgaattcttgagaaaacatgacattgattttgcatcaag |
113 |
Q |
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| T |
27747145 |
tagcgtgtatccgcctaggaaatgtccatgttattcctgttacctgtcccaccattgcccttgaattcttgagaaagaatgatgctacttttgcatcaag |
27747046 |
T |
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| Q |
114 |
accagtaagcatggccagtgatatcatc |
141 |
Q |
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| T |
27747045 |
accaatatccatgtccactgatatcatc |
27747018 |
T |
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