View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_5 (Length: 503)
Name: NF2258_1D_low_5
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Original strand, 39641007 - 39641485
Alignment:
| Q |
4 |
aacaatggccaaaatttgaaccaaatgtgcagccaataatcttccaccacctcccaacaacaaaccataaggcctatcaggagaaccgccgtaaacttcc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39641007 |
aacaatggccaaaatttgaaccaaatgtgcagccaataatcttccaccacctcccaacaacaaaccataaggcctatcaggagaaccgccataaacttcc |
39641106 |
T |
|
| Q |
104 |
ttaacatattgtttcttagcaaacaaagcagtgaaaataatcccccaagtaccacacccaccatgaagttgtgcagcttcaagaggatcatcatattgaa |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641107 |
ttaacatattgtttcttagcaaacaaagcagtgaaaataatcccccaagtaccacacccaccatgaagttgtgcagcttcaagaggatcatcatattgaa |
39641206 |
T |
|
| Q |
204 |
acttctcagctaacatattgcatccaatcaaaacccaagcggcaacgaatccacaaataattgcagcccaaggatcaacaacagaacaacttgcagttat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39641207 |
acttctcagctaacatattgcatccaatcaaaacccaagcggcaatgaatccacaaataattgcagcccaaggatcaacaacagaacaacctgcagttat |
39641306 |
T |
|
| Q |
304 |
agcagcaaaaccacctaacaaaccattacaaacatcagtaacattccaatgacctgtttgcaaacgtttcccaaacaaagtagtgagtgctgctgtgcat |
403 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641307 |
agcagcaaaaccacctaacaaaccattacaaacatcagtaacattccaatgacctgtttgcaaacgtttcccaaacaaagtagtgagtgctgctgtgcat |
39641406 |
T |
|
| Q |
404 |
ccagccaatgtagttgtcacagctgttctcccaatagcactccattgaccatagtaattaccactttcaccataaattt |
482 |
Q |
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| T |
39641407 |
ccagccaatgtagttgtcacagctgttctcccaatagcactccattgaccatagtaattaccactttcaccataaattt |
39641485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 4 - 478
Target Start/End: Original strand, 46669204 - 46669678
Alignment:
| Q |
4 |
aacaatggccaaaatttgaaccaaatgtgcagccaataatcttccaccacctcccaacaacaaaccataaggcctatcaggagaaccgccgtaaacttcc |
103 |
Q |
| |
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|||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || |
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| T |
46669204 |
aacaatagccaaaatctgaacaacatgtgcagccaataatcttccaccacctcccaacaacaaaccataagttctatcaggtgaaccagaataaacctca |
46669303 |
T |
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| Q |
104 |
ttaacatattgtttcttagcaaacaaagcagtgaaaataatcccccaagtaccacacccaccatgaagttgtgcagcttcaagaggatcatcatattgaa |
203 |
Q |
| |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46669304 |
ttcacatactgtttcttagcaaacaaagcagtgaaaataatcccccaagtaccacaaccaccatgaagttgtgcagcttcaagaggatcatcatagtgaa |
46669403 |
T |
|
| Q |
204 |
acttctcagctaacatattgcatccaatcaaaacccaagcggcaacgaatccacaaataattgcagcccaaggatcaacaacagaacaacttgcagttat |
303 |
Q |
| |
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| ||||||||||||| ||||||||||||||| |||||||| ||||| || ||||||||||| |||||||| ||||| ||||||||||| | ||||||||| |
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| T |
46669404 |
atttctcagctaacaaattgcatccaatcaacacccaagcagcaacaaaaccacaaataatagcagcccatggatccacaacagaacaccctgcagttat |
46669503 |
T |
|
| Q |
304 |
agcagcaaaaccacctaacaaaccattacaaacatcagtaacattccaatgacctgtttgcaaacgtttcccaaacaaagtagtgagtgctgctgtgcat |
403 |
Q |
| |
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||||||||||||||| | ||||||||| || |||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||| ||||| || ||| |
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| T |
46669504 |
agcagcaaaaccaccaagcaaaccattgcacacatcactaacactccaatgacctgtttgcatacgtttaccaaacaaagtagtgagagctgcagtacat |
46669603 |
T |
|
| Q |
404 |
ccagccaatgtagttgtcacagctgttctcccaatagcactccattgaccatagtaattaccactttcaccataa |
478 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46669604 |
ccagccaatgtagttgtgacagctgtcctcccaatagcactccattgaccatagtaatgaccactttcaccataa |
46669678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 227 - 462
Target Start/End: Original strand, 35415489 - 35415724
Alignment:
| Q |
227 |
ccaatcaaaacccaagcggcaacgaatccacaaataattgcagcccaaggatcaacaacagaacaacttgcagttatagcagcaaaaccacctaacaaac |
326 |
Q |
| |
|
|||||||||||||| || ||||| || ||||| | ||| || ||||| || || ||||||||||||| |||||||||||||||||||| || | |||| |
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| T |
35415489 |
ccaatcaaaacccacgcagcaacaaacccacacacaatcgcggcccatggttccacaacagaacaacccgcagttatagcagcaaaaccgccaagtaaac |
35415588 |
T |
|
| Q |
327 |
cattacaaacatcagtaacattccaatgacctgtttgcaaacgtttcccaaacaaagtagtgagtgctgctgtgcatccagccaatgtagttgtcacagc |
426 |
Q |
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| ||||| || ||||| |||||||| || || | || ||||| | ||||||||| || | ||||| ||||||||||||||||| ||||| ||| | |
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| T |
35415589 |
cgttacacacgtcagtcacattccagtgtccaactaataaccgtttactaaacaaagttgttaaagctgcagtgcatccagccaatgtcgttgtgacacc |
35415688 |
T |
|
| Q |
427 |
tgttctcccaatagcactccattgaccatagtaatt |
462 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |
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| T |
35415689 |
tgttcttccaatagcactccattgaccataataatt |
35415724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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