View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_1D_low_7 (Length: 484)
Name: NF2258_1D_low_7
Description: NF2258_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_1D_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 39640572 - 39640115
Alignment:
| Q |
1 |
aatttatatatttatttgtgacggaagaactcttaatgcatttcaaattaataatgatatcgcaattcaagtaagcaagcatataatcaaaaacttggcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39640572 |
aatttatatatttatttgtgacggaagaactcttaatgcatttcaaattaataatgatatcgcaattcaagtaagcaagcatataatcaaaaacttggcg |
39640473 |
T |
|
| Q |
101 |
actaatnnnnnnnnntgagatgtttttgctagaaagtgagcaatgcgattaacttgtctcctaacataatttaaagttattacattacattgatctataa |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39640472 |
actaataaaaaaaa-tgagatgtttttgctagaaagtgagcaatgcgattaacttgtctcctaacataatttaaagttattacattacattgatctataa |
39640374 |
T |
|
| Q |
201 |
cagttcggcacgagcttacaatatttctgaactcagtctcgtactccacctattcctttaacatttccattactatttgtgacagtccaatttaatttcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
39640373 |
cagttcggcacgagcttacaatatttctgaactcagtctcgtactccacctattcctttaatatttccattactatttgtgacagtccaattcaatttcc |
39640274 |
T |
|
| Q |
301 |
acattctgataatccatttgtttaagccaaataatgaatggactttaaaacccataagcttcagcctcttgaatcatagctgccatgtcccccgggctgg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39640273 |
acattctgataatccatttgtttaagccaaataatgaatggactttaaaacccataagcttcagcctcttgaatcat-------atgtcccccgggctgg |
39640181 |
T |
|
| Q |
401 |
aatctaaacctatagttggtctagtcaaagtgttgggtcgaatatttgttgtacctcgaagctgat |
466 |
Q |
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| T |
39640180 |
aatctaaacctatagttggtctagtcaaagtgttgggtcgaatatttgttgtacctcgaagctgat |
39640115 |
T |
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