View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2258_2D_high_4 (Length: 315)

Name: NF2258_2D_high_4
Description: NF2258_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2258_2D_high_4
NF2258_2D_high_4
[»] chr4 (1 HSPs)
chr4 (1-286)||(16054107-16054393)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 16054393 - 16054107
Alignment:
Q  1 tttgttagtttggtcctcaattgcgtcttatgtaagttagccacgttggtccaaaaagttattaaaagaagatacactcatagatgcttttaacattttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16054393 tttgttagtttggtcctcaattgcgtcttatgtaagttagccacattggtccaaaaagttattaaaagaagatacactcatagatgcttttaacattttc 16054294  T
Q  101 gatacattcaaagactattagtgaaaccga-tcgcatatttatggatcaaaatgaatgtttactttcaaaattatatttactttatctcattcacttgtt 199  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16054293 gatacattcaaagactattagtgaaaccggctcgcatatttatggatcaaaatgaatgtttactttcaaaattatatttactttatctcattcacttgtt 16054194  T
Q  200 taaaggatgggttttcataatgttttccatgtctcatgacttgagtaagcatcttacacttgttatgttatttttattgaacaccaa 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16054193 taaaggatgggttttcataatgttttccatgtctcatgacttgagtaagcatcttacacttgttatgttatttttattgaacaccaa 16054107  T

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