View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_2D_low_27 (Length: 221)
Name: NF2258_2D_low_27
Description: NF2258_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_2D_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 14278345 - 14278539
Alignment:
| Q |
10 |
acttggcaaaaagatcataaaaagggtggaaatgcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatgg |
109 |
Q |
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| T |
14278345 |
acttggcaaaaagatcataaaaagggtggcaatgcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatga |
14278444 |
T |
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| Q |
110 |
aaatccattcttatactagcattcaccctgtcaacatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaat |
204 |
Q |
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| T |
14278445 |
aaatccattcttatacttgcattcaccctgtcaacatttccctgagaaaatgcattctgctttcttaagctacgaattgtcataacaccagaaat |
14278539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 14300082 - 14300276
Alignment:
| Q |
10 |
acttggcaaaaagatcataaaaagggtggaaatgcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatgg |
109 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14300082 |
acttggcaaaaagatcataaaaagcgtggcaatgcaaaggaaagtcactcccatatagtccaagcgaaaaccaagccattcatttgcaccattgttatga |
14300181 |
T |
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| Q |
110 |
aaatccattcttatactagcattcaccctgtcaacatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaat |
204 |
Q |
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| T |
14300182 |
aaatccattcttagacttgcattcaccctgtcaacattttcttgagaaaatgcattctgctttcttgagctacggattgtcataacaccagaaat |
14300276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 14316556 - 14316750
Alignment:
| Q |
10 |
acttggcaaaaagatcataaaaagggtggaaatgcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatgg |
109 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
14316556 |
acttggcaaaaagatcataaaaagggtggcaatgcaaaggaaaacaactcccatatagtccaaacgaaaaccaagccattcatttgcaccattgttatga |
14316655 |
T |
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| Q |
110 |
aaatccattcttatactagcattcaccctgtcaacatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaat |
204 |
Q |
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||||||||||||| ||| |||||||||||||||| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14316656 |
aaatccattcttagacttgcattcaccctgtcaatattttcttgagaaaatgcattctgctttcttaagcaacggattgtcataacaccagaaat |
14316750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 25881660 - 25881854
Alignment:
| Q |
10 |
acttggcaaaaagatcataaaaagggtggaaatgcaaaggaaaatcactcccgtatagtccaagcgaaaaccaagccattcatttgcaccaatgttatgg |
109 |
Q |
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|||||| |||||||||||||||||||||| | |||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||| |||||||| |
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| T |
25881660 |
acttggtaaaaagatcataaaaagggtggcagtgcaaaggaaaacaactccattatagtctaaacgaaaaccaagccattcatttgcaccattgttatgg |
25881759 |
T |
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| Q |
110 |
aaatccattcttatactagcattcaccctgtcaacatttccctgagaaaatgcattctgctttcttaagctacggattgtcataacaccagaaat |
204 |
Q |
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||||||||||||| ||| ||||||||| |||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25881760 |
aaatccattcttagacttgcattcaccttgtcaatattttcctgacaaaatgtattctgctttcttaagctacggattgtcataacaccagaaat |
25881854 |
T |
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