View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_2D_low_29 (Length: 216)
Name: NF2258_2D_low_29
Description: NF2258_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_2D_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12177005 - 12176818
Alignment:
| Q |
17 |
tgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntc |
116 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12177005 |
tgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcaaaaaaatc |
12176906 |
T |
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| Q |
117 |
tttcccaatgagggatatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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| T |
12176905 |
cttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaaggcaaccctttggctttgaaagttctgggttcat |
12176818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12421433 - 12421246
Alignment:
| Q |
17 |
tgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntc |
116 |
Q |
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| T |
12421433 |
tgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcaaaaaaatc |
12421334 |
T |
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| Q |
117 |
tttcccaatgagggatatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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| T |
12421333 |
cttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaaggcaaccctttggctttgaaagttctgggttcat |
12421246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12188326 - 12188139
Alignment:
| Q |
17 |
tgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntc |
116 |
Q |
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| T |
12188326 |
tgtgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctcaaaactccatcaggttgtttagtttgaatgctttcaacaaaatc |
12188227 |
T |
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| Q |
117 |
tttcccaatgagggatatgaggagatatcaaacaatgtagtttcttat---gccggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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| T |
12188226 |
cttcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaaggcaaccctttggctttgaaagttctgggttcat |
12188139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 12432754 - 12432567
Alignment:
| Q |
17 |
tgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntc |
116 |
Q |
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||||||||| | |||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| || |
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| T |
12432754 |
tgtgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctcaaaactccatcaggttgtttagtttgaatgctttcaacaaaatc |
12432655 |
T |
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| Q |
117 |
tttcccaatgagggatatgaggagatatcaaacaatgtagtttcttat---gccggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
12432654 |
cttcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaaggcaaccctttggctttgaaagttctgggttcat |
12432567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 9394157 - 9393984
Alignment:
| Q |
31 |
gaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntctttcccaatgaggg |
130 |
Q |
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|||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
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| T |
9394157 |
gagggattgacgaaattcttcaagttaaggaaatgaactttcaaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttccgaatgaggg |
9394058 |
T |
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| Q |
131 |
atatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||| | ||||||| |
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| T |
9394057 |
gtatgaggagatatcaaataatgtagtttcttatgcaaaaggcgactctttggctttgaaagttatgggttcat |
9393984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 32633678 - 32633728
Alignment:
| Q |
30 |
ggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
80 |
Q |
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| T |
32633678 |
ggaggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactcc |
32633728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 42265792 - 42265724
Alignment:
| Q |
136 |
aggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
201 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
42265792 |
aggaaatatcaaacaatgtagtttcttatgcaaaaggcaaccatttggctttgaaagttctgggttcat |
42265724 |
T |
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