View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_2D_low_3 (Length: 1084)
Name: NF2258_2D_low_3
Description: NF2258_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_2D_low_3 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 21)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 188 - 1069
Target Start/End: Complemental strand, 12189020 - 12188139
Alignment:
| Q |
188 |
tacattttttaatgatttgtttcttacaag-atggggatgatcatttagtattattctatttgcaatttcnnnnnnnngtttataaaatggatacaaatt |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| |||| |||||||||| |||| ||||| | |||||||||||||||||||| |
|
|
| T |
12189020 |
tacatttttaaatgatttgtttcttacaaatatagggatgataatttt-tattattctacttgctatttctttctt--ggttataaaatggatacaaatt |
12188924 |
T |
|
| Q |
287 |
ttcttgaattatattgtatcgtctaattattaattaatttacagtctccttttatatactaacatttatcagtattcttacattttaggactgaaaatta |
386 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||||||||||| ||||||||| |||||||||||||| | | |
|
|
| T |
12188923 |
ttcttgaattatattgtatcctctaattattaactaatttatagaatccttttatactctaacatttatc-gtattcttatattttaggactgaatctga |
12188825 |
T |
|
| Q |
387 |
cttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagcttagatgtttgttcatactagatgaaaactattcaagc |
486 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12188824 |
cttgattggagacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcataccagatgaagactattcaagc |
12188725 |
T |
|
| Q |
487 |
attgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaagacaacccttgctgctgccatatttc |
586 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12188724 |
attgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctgccatatttc |
12188625 |
T |
|
| Q |
587 |
agaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttc |
686 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12188624 |
agaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttc |
12188525 |
T |
|
| Q |
687 |
taagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactggat |
786 |
Q |
| |
|
|||| |||||||| |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
12188524 |
taagctactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttatgaaaagactcaaacgcatgaaagctttcattgtactagat |
12188425 |
T |
|
| Q |
787 |
gatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagcatg |
886 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12188424 |
gatgttcgtattttagaacttctaaataatttgattggagcagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagtatg |
12188325 |
T |
|
| Q |
887 |
tgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntctt |
986 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
12188324 |
tgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctcaaaactccatcaggttgtttagtttgaatgctttcaacaaaatcct |
12188225 |
T |
|
| Q |
987 |
tcccaatgagggatatgaggagatatcaaacaatgtagtttcttat---gccggcaaccctttggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
12188224 |
tcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaaggcaaccctttggctttgaaagttctgggttcat |
12188139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 188 - 1069
Target Start/End: Complemental strand, 12433448 - 12432567
Alignment:
| Q |
188 |
tacattttttaatgatttgtttcttacaag-atggggatgatcatttagtattattctatttgcaatttcnnnnnnnngtttataaaatggatacaaatt |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||| |||| |||||||||| |||| ||||| | |||||||||||||||||||| |
|
|
| T |
12433448 |
tacatttttaaatgatttgtttcttacaaatatagggatgataatttt-tattattctacttgctatttctttctt--ggttataaaatggatacaaatt |
12433352 |
T |
|
| Q |
287 |
ttcttgaattatattgtatcgtctaattattaattaatttacagtctccttttatatactaacatttatcagtattcttacattttaggactgaaaatta |
386 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||||||||||| ||||||||| |||||||||||||| | | |
|
|
| T |
12433351 |
ttcttgaattatattgtatcctctaattattaactaatttatagaatccttttatactctaacatttatc-gtattcttatattttaggactgaatctga |
12433253 |
T |
|
| Q |
387 |
cttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagcttagatgtttgttcatactagatgaaaactattcaagc |
486 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12433252 |
cttgattggagacatcatcaaagcagttctccaaaaattgaatcaaaagtatacaaatgagcttagatgtttgttcataccagatgaagactattcaagc |
12433153 |
T |
|
| Q |
487 |
attgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaagacaacccttgctgctgccatatttc |
586 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12433152 |
attgaatcatttttaaaagatgactcaagagaagttagaactattggaatttggggcatgggaggcataggaaagacaacccttgctgctgccatatttc |
12433053 |
T |
|
| Q |
587 |
agaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttc |
686 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12433052 |
agaaggtatcttccagatatgaaggtagttgcttcttagaaaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttc |
12432953 |
T |
|
| Q |
687 |
taagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactggat |
786 |
Q |
| |
|
|||| |||||||| |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
12432952 |
taagctactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttatgaaaagactcaaacgcatgaaagctttcattgtactagat |
12432853 |
T |
|
| Q |
787 |
gatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagcatg |
886 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12432852 |
gatgttcgtattttagaacttctaaataatttgattggagcagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagtatg |
12432753 |
T |
|
| Q |
887 |
tgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnntctt |
986 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||| || | |
|
|
| T |
12432752 |
tgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctcaaaactccatcaggttgtttagtttgaatgctttcaacaaaatcct |
12432653 |
T |
|
| Q |
987 |
tcccaatgagggatatgaggagatatcaaacaatgtagtttcttat---gccggcaaccctttggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
12432652 |
tcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaaggcaaccctttggctttgaaagttctgggttcat |
12432567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 349 - 1069
Target Start/End: Complemental strand, 12177541 - 12176818
Alignment:
| Q |
349 |
catttatcagtattcttacattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagc |
448 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| | ||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||| | |
|
|
| T |
12177541 |
catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaac |
12177442 |
T |
|
| Q |
449 |
ttagatgtttgttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatggg |
548 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12177441 |
ttagatgcttgttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatggg |
12177342 |
T |
|
| Q |
549 |
aggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaag |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12177341 |
aggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccatgtatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaag |
12177242 |
T |
|
| Q |
649 |
agacatgggctcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatga |
748 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
12177241 |
agacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttatga |
12177142 |
T |
|
| Q |
749 |
aaagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagc |
848 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12177141 |
aaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaacttctagataatttgattggagcagggcatgattgccttggagt |
12177042 |
T |
|
| Q |
849 |
tggtagcagagtcattgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12177041 |
tggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
12176942 |
T |
|
| Q |
949 |
atcaggttgttcagtttgaatgctttcnnnnnnntctttcccaatgagggatatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctt |
1045 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12176941 |
atcaggttgttcagtttgaatgctttcaaaaaaatccttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaaggcaaccctt |
12176842 |
T |
|
| Q |
1046 |
tggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
12176841 |
tggctttgaaagttctgggttcat |
12176818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 349 - 1069
Target Start/End: Complemental strand, 12421969 - 12421246
Alignment:
| Q |
349 |
catttatcagtattcttacattttaggactgaaaattacttgatagatgacatcatcaaagcagtttcccaaaaactgaatcaaaagtataccaatgagc |
448 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| | ||||||| | ||||||||||||||||| ||||||| |||||||||||||||| ||||| | |
|
|
| T |
12421969 |
catttatctgtattcttatattttaggactgaagctgacttgattggagacatcatcaaagcagtcctccaaaaattgaatcaaaagtatacaaatgaac |
12421870 |
T |
|
| Q |
449 |
ttagatgtttgttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatggg |
548 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12421869 |
ttagatgcttgttcataccagatgaaaactattcaagcattgaatcattattaaaagtagattcaagagaagttagaactattggaatttggggcatggg |
12421770 |
T |
|
| Q |
549 |
aggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaag |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12421769 |
aggcataggaaagacaacccttgctgctgccatatttcagaaggtatcttccatgtatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaag |
12421670 |
T |
|
| Q |
649 |
agacatgggctcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatga |
748 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
12421669 |
agacatgggctcagttacacatacaacagacttctttctaagttactaggggaagatcttcatattgagactcctaaagtaatatcatctatggttatga |
12421570 |
T |
|
| Q |
749 |
aaagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagc |
848 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
12421569 |
aaagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaacttctagataatttgattggagcagggcatgattgccttggagt |
12421470 |
T |
|
| Q |
849 |
tggtagcagagtcattgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
948 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12421469 |
tggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
12421370 |
T |
|
| Q |
949 |
atcaggttgttcagtttgaatgctttcnnnnnnntctttcccaatgagggatatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctt |
1045 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
12421369 |
atcaggttgttcagtttgaatgctttcaaaaaaatccttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaaggcaaccctt |
12421270 |
T |
|
| Q |
1046 |
tggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
12421269 |
tggctttgaaagttctgggttcat |
12421246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 684 - 1069
Target Start/End: Complemental strand, 9394372 - 9393984
Alignment:
| Q |
684 |
ttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactg |
783 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
9394372 |
ttctaagttaatagcggaagatcttggtattgacactcccaaagtaatatcatctatggttatgtaaagactcaaacacatgaaagctttcattgtacta |
9394273 |
T |
|
| Q |
784 |
gatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagc |
883 |
Q |
| |
|
|| || ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9394272 |
gacgacattcatactttaaaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagaaattgtgacaaccagagataagc |
9394173 |
T |
|
| Q |
884 |
atgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactccatcaggttgttcagtttgaatgctttcnnnnnnnt |
983 |
Q |
| |
|
||||||||| || |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9394172 |
atgtgttgataggcagagggattgacgaaattcttcaagttaaggaaatgaactttcaaaactccatcaggttgttcagtttgaatgctttcaacaaaat |
9394073 |
T |
|
| Q |
984 |
ctttcccaatgagggatatgaggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
| |||| |||||||| ||||||||||||||||| ||||||||||||||||| ||| || ||||||||||||||||| | ||||||| |
|
|
| T |
9394072 |
cgttccgaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaaggcgactctttggctttgaaagttatgggttcat |
9393984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 501 - 948
Target Start/End: Original strand, 32633281 - 32633728
Alignment:
| Q |
501 |
aaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttc |
600 |
Q |
| |
|
|||||||||||||| ||||||| || |||||| ||| ||||||||| |||||||| |||||||||||||||||||| | ||||| | ||| |||||| |
|
|
| T |
32633281 |
aaaaattgattcaatagaagttcaaatcattggactttggggcatggggggcataggtaagacaacccttgctgctgctttgtttcaaagggtctctttc |
32633380 |
T |
|
| Q |
601 |
atatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagttactaggga |
700 |
Q |
| |
|
| |||||||| ||||||||| |||||||||| ||||||| |||||| || ||||| ||| || || || ||||| ||||||||||||||||||| || |
|
|
| T |
32633381 |
aagtatgaaggcagttgcttcttagaaaatgtgacagaagtatcaaaaaggcatggaatcaatttcatatgcaacaaacttctttctaagttactaaggg |
32633480 |
T |
|
| Q |
701 |
aagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactggatgatgttcgtacttt |
800 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||| ||| | |||| |||||||||| |||||||| ||||||||||||| |||||||||| |||||| |
|
|
| T |
32633481 |
aagatcttgatattgaatctgccaaagtaataccatccatgatcatgagaagactcaaacgcatgaaatctttcattgtactagatgatgttcatacttt |
32633580 |
T |
|
| Q |
801 |
agaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagcatgtgttgacagaagga |
900 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| ||| ||| || |||| |||||||| ||||||||| || || || |||||||||||| || ||| |
|
|
| T |
32633581 |
ggaacttctgcaaaacttgattggagtcgggaatggttggctaggagatggtagcatagtcattgtaacgacaagggataagcatgtgctggttagtgga |
32633680 |
T |
|
| Q |
901 |
ggaattgacgaaattcatcaagttaaggaaatgaactctcaaaactcc |
948 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
32633681 |
ggaattgacaaaattcatcaagttaaagaaatgaactctcgaaactcc |
32633728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 427 - 974
Target Start/End: Complemental strand, 6310631 - 6310084
Alignment:
| Q |
427 |
aatcaaaagtataccaatgagcttagatgtttgttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaa |
526 |
Q |
| |
|
|||||| ||||||| ||||| ||| |||| |||||||| ||||||||||||| |||||| |||| ||| ||||| |||| || ||||||| || |
|
|
| T |
6310631 |
aatcaacagtatacaaatgatcttccatgtaatttcatacttgatgaaaactattggagcattcaatctttaataaaatctgatctaacagaagttcaaa |
6310532 |
T |
|
| Q |
527 |
ctattggaatttagggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctaga |
626 |
Q |
| |
|
|||||| ||| ||| |||||||||| ||| |||||||||||||||||||| || ||||| | ||| ||||| | ||||||||| ||||||||| |||| |
|
|
| T |
6310531 |
tcattggactttggggtatgggaggcacaggtaagacaacccttgctgctgctatgtttcaaagggtctcttttaaatatgaaggcagttgcttcttaga |
6310432 |
T |
|
| Q |
627 |
aaatgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaa |
726 |
Q |
| |
|
||| || ||||||| |||||||||||||||| ||| |||||||| ||||| ||||||||| |||||||| || ||||||||| |||||| ||| ||||| |
|
|
| T |
6310431 |
aaaggtaacagaagtatcaaagagacatgggatcaattacacatgcaacaaacttctttccaagttactcagggaagatcttgatattgatacttccaaa |
6310332 |
T |
|
| Q |
727 |
gtaatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggag |
826 |
Q |
| |
|
||||| |||| ||| | |||| |||||||||| |||||||| ||||||||||| | |||||||| | || || ||||||||| |||| |||||||||| |
|
|
| T |
6310331 |
ttaataccatcaatgatcatgagaagactcaaacgcatgaaatctttcattgtaatagatgatgtacataattcagaacttctgcaaaacttgattggag |
6310232 |
T |
|
| Q |
827 |
tagggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaa |
926 |
Q |
| |
|
|||| |||| ||| || ||| ||||||||| |||||||||||| || || ||||||||||| |||| | ||||| ||||| ||||| || ||||||| |
|
|
| T |
6310231 |
taggacatggttggctaggatctggtagcacagtcattgtgacgactagggataagcatgtcttgataagtggagggattgaaaaaatttatgaagttaa |
6310132 |
T |
|
| Q |
927 |
ggaaatgaactctcaaaactccatcaggttgttcagtttgaatgcttt |
974 |
Q |
| |
|
| | ||||| || ||||| ||| || | | ||||| ||||||||||| |
|
|
| T |
6310131 |
gaagatgaattcccaaaattccctccagcttttcagcttgaatgcttt |
6310084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 460 - 888
Target Start/End: Original strand, 5549762 - 5550190
Alignment:
| Q |
460 |
ttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaa |
559 |
Q |
| |
|
||||||| |||||||||||| |||||| |||| ||| ||||| ||||||||| ||||||| || |||||| ||| ||| ||||||||||| || | |
|
|
| T |
5549762 |
ttcatacctgatgaaaactatcggagcattcaatctttaataaaatttgattcaacagaagttcaaatcattggagtttggggtatgggaggcattggta |
5549861 |
T |
|
| Q |
560 |
agacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggct |
659 |
Q |
| |
|
||||||||||||| |||| || ||||| | ||| ||||||| |||||| || ||||||||| | ||||| || ||||||| |||||| || | ||| | |
|
|
| T |
5549862 |
agacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgaaaaggttacagaagtatcaaaaagtcgtggaat |
5549961 |
T |
|
| Q |
660 |
cagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaa |
759 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||| ||| | | | |||||||||| |
|
|
| T |
5549962 |
caattacacatgcaacaaacttctttctaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaagactcaaa |
5550061 |
T |
|
| Q |
760 |
agcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagag |
859 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || || ||||||||| |||| |||||||||||||| |||| ||| || ||| ||||||| | || |
|
|
| T |
5550062 |
agcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacag |
5550161 |
T |
|
| Q |
860 |
tcattgtgacaaccagagataagcatgtg |
888 |
Q |
| |
|
|||||||||| || || ||||| |||||| |
|
|
| T |
5550162 |
tcattgtgactactagggataaacatgtg |
5550190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 460 - 888
Target Start/End: Complemental strand, 5608167 - 5607739
Alignment:
| Q |
460 |
ttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaa |
559 |
Q |
| |
|
||||||| ||||||||||||| ||| || |||| ||| ||||| |||| |||| ||||||| || |||||| ||| ||| |||||||||||||| | |
|
|
| T |
5608167 |
ttcatacctgatgaaaactattggagcgttcaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggta |
5608068 |
T |
|
| Q |
560 |
agacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggct |
659 |
Q |
| |
|
||||||||||||| |||| || ||||| | ||| ||||||| |||||| || ||||||||| | || || || ||||||| |||||| || ||||| | |
|
|
| T |
5608067 |
agacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgagaaggtgacagaagtatcaaaaagtcatggaat |
5607968 |
T |
|
| Q |
660 |
cagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaa |
759 |
Q |
| |
|
|| |||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||| |||||||||| ||| | | | |||||||||| |
|
|
| T |
5607967 |
caattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaagactcaaa |
5607868 |
T |
|
| Q |
760 |
agcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagag |
859 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || || ||||||||| |||| |||||||||||||| |||| ||| || ||| ||||||| | || |
|
|
| T |
5607867 |
agcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacag |
5607768 |
T |
|
| Q |
860 |
tcattgtgacaaccagagataagcatgtg |
888 |
Q |
| |
|
|||||||||| || || ||||| |||||| |
|
|
| T |
5607767 |
tcattgtgactactagggataaacatgtg |
5607739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 460 - 888
Target Start/End: Original strand, 5627203 - 5627631
Alignment:
| Q |
460 |
ttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaa |
559 |
Q |
| |
|
||||||| ||||||||||||| ||| || |||| ||| ||||| |||| |||| ||||||| || |||||| ||| ||| |||||||||||||| | |
|
|
| T |
5627203 |
ttcatacctgatgaaaactattggagcgttcaatctttaataaaatttgactcaacagaagttcaaatcattggactttggggtatgggaggcataggta |
5627302 |
T |
|
| Q |
560 |
agacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggct |
659 |
Q |
| |
|
||||||||||||| |||| || ||||| | ||| ||||||| |||||| || ||||||||| | || || || ||||||| |||||| || ||||| | |
|
|
| T |
5627303 |
agacaacccttgccactgctatgtttcaaagggtctctttcaaatatgatggcagttgcttctttgagaaggtgacagaagtatcaaaaagtcatggaat |
5627402 |
T |
|
| Q |
660 |
cagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaa |
759 |
Q |
| |
|
|| |||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||| ||||| |||||||||| ||| | | | |||||||||| |
|
|
| T |
5627403 |
caattacacatgcaacaaacttctttgtaagttactaaaagaagatcttgatattgacactcccaaactaatatcatccatgatcagaagaagactcaaa |
5627502 |
T |
|
| Q |
760 |
agcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagag |
859 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | || || ||||||||| |||| |||||||||||||| |||| ||| || ||| ||||||| | || |
|
|
| T |
5627503 |
agcatgaaatctttcattgtactagatgatgtacataattcagaacttctgcaaaacttgattggagtaggacatggttggctaggatctggtagtacag |
5627602 |
T |
|
| Q |
860 |
tcattgtgacaaccagagataagcatgtg |
888 |
Q |
| |
|
|||||||||| || || ||||| |||||| |
|
|
| T |
5627603 |
tcattgtgactactagggataaacatgtg |
5627631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 460 - 944
Target Start/End: Original strand, 13164854 - 13165338
Alignment:
| Q |
460 |
ttcatactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaa |
559 |
Q |
| |
|
|||||||| |||||||| || | |||||| |||| ||| |||||||||||||| ||||||| || |||||| ||| ||| ||||| |||| ||| | |
|
|
| T |
13164854 |
ttcatactcgatgaaaattactggagcattaaatctttaataaaaattgattcatcagaagttcaaatcattggagtttggggaatggggggcacaggca |
13164953 |
T |
|
| Q |
560 |
agacaacccttgctgctgccatatttcagaaggtatctt-tcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggc |
658 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || |||| ||| |||||||| ||||||| |||||||||| |||||| ||||| | | ||||| |
|
|
| T |
13164954 |
agacaacccttgctgctgccatgtttcaaagagtctcttctcac-tatgaaggccattgcttcttagaaaatgtgacagaacaatcagaaaagcatggaa |
13165052 |
T |
|
| Q |
659 |
tcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaa |
758 |
Q |
| |
|
||| | |||||| ||||| ||||||||| |||||||||||| |||| |||| |||| |||| |||||||||| |||| ||| | | || ||||||||| |
|
|
| T |
13165053 |
tcaatgacacatgcaacaaacttctttccaagttactaggggaagaccttgatattaccactctcaaagtaataccatccatgatcaggagaagactcaa |
13165152 |
T |
|
| Q |
759 |
aagcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcaga |
858 |
Q |
| |
|
| |||||||| ||||||||||||| ||||| || | ||| | ||||||||| |||| ||||||||||| || |||| ||| | ||||||||||||| | |
|
|
| T |
13165153 |
acgcatgaaatctttcattgtactagatgacgtacatacctcggaacttctacaaaacttgattggagtgggacatggttggttaggagctggtagcaca |
13165252 |
T |
|
| Q |
859 |
gtcattgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactctcaaaa |
944 |
Q |
| |
|
||||||||||| || || |||||||||||| ||| | ||||||||||| |||||| || |||||||| | |||||||| ||||| |
|
|
| T |
13165253 |
gtcattgtgacgactagggataagcatgtgctgataagtggaggaattgaagaaatttatgaagttaagaagatgaactcccaaaa |
13165338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 463 - 938
Target Start/End: Original strand, 14404693 - 14405168
Alignment:
| Q |
463 |
atactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaaga |
562 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||||| ||||| |||||||| | ||||| || |||||||||| ||| |||||||||| ||| |||| |
|
|
| T |
14404693 |
atacttgatgaaaactattggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaaga |
14404792 |
T |
|
| Q |
563 |
caacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggctcag |
662 |
Q |
| |
|
||||||||||| || | ||||| | | | ||||||| ||||||||| || ||||| | ||||| || ||||||| ||| || || ||||| ||| |
|
|
| T |
14404793 |
caacccttgcttctattctgtttcaaaggttctctttcaaatatgaaggcagctgcttgtttgaaaaggtgacagaagtatcgaaaaggcatggaatcaa |
14404892 |
T |
|
| Q |
663 |
ttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagc |
762 |
Q |
| |
|
|||| | | ||||| ||||||||| ||||||||| || ||||||||| |||||||| | ||||| ||||| |||||||| | | | ||||||||||||| |
|
|
| T |
14404893 |
ttacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaataccatctatgatcagaagaagactcaaaagc |
14404992 |
T |
|
| Q |
763 |
atgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtca |
862 |
Q |
| |
|
|||||| ||||||||||||| |||||||| | || || ||||||||| |||| ||||||||||| || |||| ||| || ||| ||||||||| ||||| |
|
|
| T |
14404993 |
atgaaatctttcattgtactagatgatgtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctggtagcacagtca |
14405092 |
T |
|
| Q |
863 |
ttgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactc |
938 |
Q |
| |
|
| ||||| || || |||||||||||| ||| | |||||||| ||| ||||| || |||||||| | |||||||| |
|
|
| T |
14405093 |
tcgtgactacgagggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactc |
14405168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 529 - 944
Target Start/End: Original strand, 5571414 - 5571829
Alignment:
| Q |
529 |
attggaatttagggcatgggaggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaa |
628 |
Q |
| |
|
|||||| ||| ||| |||||||||| || |||||||| ||||||||||| || ||||| | | | ||||||| ||||||||| | ||||||| |||||| |
|
|
| T |
5571414 |
attggactttggggaatgggaggcactggtaagacaactcttgctgctgctatgtttcaaaggttctctttcaaatatgaaggcaattgcttcttagaaa |
5571513 |
T |
|
| Q |
629 |
atgtcacagaagaatcaaagagacatgggctcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagt |
728 |
Q |
| |
|
|| ||||||| ||||| | ||||| ||| |||||| | ||||| ||||||||| |||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
5571514 |
gggtgacagaagtttcaaaaaagcatggaatcaattacacgtgcaacaaacttctttccaagttactaggggaagatcttcgtattgacactcccaaagt |
5571613 |
T |
|
| Q |
729 |
aatatcatctatggttatgaaaagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagta |
828 |
Q |
| |
|
||| || | ||| | | || |||||||| | |||||| ||||||||||| | |||||||| | || | |||||||| || | ||||||||||| |
|
|
| T |
5571614 |
aatcccagccatgatcaagagaagactcagacatatgaaatctttcattgtattagatgatgtacataactctgaacttctgcaagacttgattggagtg |
5571713 |
T |
|
| Q |
829 |
gggcatgattgccttggagctggtagcagagtcattgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaagg |
928 |
Q |
| |
|
| || ||| |||||| ||||||||| |||||||||||| || || ||||| |||||| ||| | |||||||||||||||||| || |||||||| |
|
|
| T |
5571714 |
agaggtggttggcttggacctggtagcatagtcattgtgacgactagggataaacatgtgctgataagtggaggaattgacgaaatttatgaagttaaga |
5571813 |
T |
|
| Q |
929 |
aaatgaactctcaaaa |
944 |
Q |
| |
|
| |||||||| ||||| |
|
|
| T |
5571814 |
agatgaactcccaaaa |
5571829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12178620 - 12178545
Alignment:
| Q |
20 |
tctttgaagtagctaatttatctggcttcgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12178620 |
tctttgaagtagctaatttatctggctttgattcaagtacatataggtattttctttgcttctacttttacaaatt |
12178545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12190315 - 12190240
Alignment:
| Q |
20 |
tctttgaagtagctaatttatctggcttcgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
95 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12190315 |
tctttgaagtagccaatttatctggctttgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
12190240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12423048 - 12422973
Alignment:
| Q |
20 |
tctttgaagtagctaatttatctggcttcgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12423048 |
tctttgaagtagctaatttatctggctttgattcaagtacatataggtattttctttgcttctacttttacaaatt |
12422973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 12434743 - 12434668
Alignment:
| Q |
20 |
tctttgaagtagctaatttatctggcttcgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
95 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12434743 |
tctttgaagtagccaatttatctggctttgattcaagtacatataggtattttctttgcttctacttttgcaaatt |
12434668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 750 - 807
Target Start/End: Original strand, 5649857 - 5649914
Alignment:
| Q |
750 |
aagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaactt |
807 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||| ||||||| ||||||| |
|
|
| T |
5649857 |
aagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt |
5649914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 750 - 807
Target Start/End: Complemental strand, 5603314 - 5603257
Alignment:
| Q |
750 |
aagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaactt |
807 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||||||| ||||||| ||||||| |
|
|
| T |
5603314 |
aagactcaaaagcataaaagctttcgttgtattagatgatgtacgtacttcagaactt |
5603257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 750 - 807
Target Start/End: Original strand, 5632056 - 5632113
Alignment:
| Q |
750 |
aagactcaaaagcatgaaagctttcattgtactggatgatgttcgtactttagaactt |
807 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| | |||||||| ||||||| ||||||| |
|
|
| T |
5632056 |
aagactcaaaagcataaaagctttcgttgtattagatgatgtacgtacttcagaactt |
5632113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 529 - 567
Target Start/End: Complemental strand, 6062778 - 6062740
Alignment:
| Q |
529 |
attggaatttagggcatgggaggcataggaaagacaacc |
567 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
6062778 |
attggaatttggggcatgggaggaataggaaagacaacc |
6062740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 116; Significance: 2e-58; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 463 - 938
Target Start/End: Complemental strand, 14160 - 13685
Alignment:
| Q |
463 |
atactagatgaaaactattcaagcattgaatcattattaaaaattgattcaagagaagttagaactattggaatttagggcatgggaggcataggaaaga |
562 |
Q |
| |
|
||||| ||||||||||||| |||||| |||||||| ||||| |||||||| | ||||| || |||||||||| ||| |||||||||| ||| |||| |
|
|
| T |
14160 |
atacttgatgaaaactattggagcattcaatcattaataaaatttgattcagcacaagttcaaatcattggaatttggggtatgggaggcacaggtaaga |
14061 |
T |
|
| Q |
563 |
caacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaagagacatgggctcag |
662 |
Q |
| |
|
||||||||||| || | ||||| | | | ||||||| ||||||||| || ||||| | ||||| || ||||||| ||| || || ||||| ||| |
|
|
| T |
14060 |
caacccttgcttctattctgtttcaaaggttctctttcaaatatgaaggcagctgcttgtttgaaaaggtgacagaagtatcgaaaaggcatggaatcaa |
13961 |
T |
|
| Q |
663 |
ttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatgaaaagactcaaaagc |
762 |
Q |
| |
|
|||| | | ||||| ||||||||| ||||||||| || ||||||||| |||||||| | ||||| ||||| |||||||| | | | ||||||||||||| |
|
|
| T |
13960 |
ttacgcgtgcaacaaacttctttccaagttactaagggaagatcttgatattgacagtcccaaactaataccatctatgatcagaagaagactcaaaagc |
13861 |
T |
|
| Q |
763 |
atgaaagctttcattgtactggatgatgttcgtactttagaacttctagaaaatttgattggagtagggcatgattgccttggagctggtagcagagtca |
862 |
Q |
| |
|
|||||| ||||||||||||| |||||||| | || || ||||||||| |||| ||||||||||| || |||| ||| || ||| ||||||||| ||||| |
|
|
| T |
13860 |
atgaaatctttcattgtactagatgatgtacataattcagaacttcttcaaaacttgattggagtgggacatggttggctaggatctggtagcacagtca |
13761 |
T |
|
| Q |
863 |
ttgtgacaaccagagataagcatgtgttgacagaaggaggaattgacgaaattcatcaagttaaggaaatgaactc |
938 |
Q |
| |
|
| ||||| || || |||||||||||| ||| | |||||||| ||| ||||| || |||||||| | |||||||| |
|
|
| T |
13760 |
tcgtgactacgagggataagcatgtgctgataagtggaggaatcgacaaaatttatgaagttaagaagatgaactc |
13685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 549 - 796
Target Start/End: Complemental strand, 19493062 - 19492815
Alignment:
| Q |
549 |
aggcataggaaagacaacccttgctgctgccatatttcagaaggtatctttcatatatgaaggtagttgcttcctagaaaatgtcacagaagaatcaaag |
648 |
Q |
| |
|
||||||||| |||||| || ||| |||||| || ||||| || | |||| || |||| |||||| |||||| ||||||| || ||||||||||||| |
|
|
| T |
19493062 |
aggcataggtaagacagccattgttgctgctatgtttcaaaatttctcttgcaaatatcaaggtacctgcttcttagaaaaggtggcagaagaatcaaaa |
19492963 |
T |
|
| Q |
649 |
agacatgggctcagttacacatacaacagacttctttctaagttactagggaaagatcttggtattgacactaccaaagtaatatcatctatggttatga |
748 |
Q |
| |
|
|| |||| ||| || ||| || || | |||| |||| | ||||| ||| ||||| || ||| ||||| | | |||||| ||||| ||||| || | |
|
|
| T |
19492962 |
aggaatggaatcaatttcacttataaaaaacttgtttccacattactcggggaagatgttaatatcgacacgcctatagtaatgtcatccatggtcatta |
19492863 |
T |
|
| Q |
749 |
aaagactcaaaagcatgaaagctttcattgtactggatgatgttcgta |
796 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
19492862 |
gaagactcaaaggaatgaaagctttcattgtactagatgatgttcgta |
19492815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1004 - 1069
Target Start/End: Complemental strand, 42265792 - 42265724
Alignment:
| Q |
1004 |
aggagatatcaaacaatgtagtttcttatgc---cggcaaccctttggctttgaaagttcttggttcat |
1069 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
42265792 |
aggaaatatcaaacaatgtagtttcttatgcaaaaggcaaccatttggctttgaaagttctgggttcat |
42265724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 530 - 573
Target Start/End: Complemental strand, 23455203 - 23455160
Alignment:
| Q |
530 |
ttggaatttagggcatgggaggcataggaaagacaacccttgct |
573 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||||||||||| |
|
|
| T |
23455203 |
ttggaatatggggcatgggtggcataggaaagacaacccttgct |
23455160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University