View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_2D_low_5 (Length: 672)
Name: NF2258_2D_low_5
Description: NF2258_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_2D_low_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 1 - 672
Target Start/End: Original strand, 49008186 - 49008857
Alignment:
| Q |
1 |
agttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008186 |
agttgtccatttgtattgaaaccagacatcacagcaccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccaga |
49008285 |
T |
|
| Q |
101 |
acaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008286 |
acaatctcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttg |
49008385 |
T |
|
| Q |
201 |
gagcccagcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008386 |
gagcccagcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagct |
49008485 |
T |
|
| Q |
301 |
tcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008486 |
tcacctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctat |
49008585 |
T |
|
| Q |
401 |
gtgcattaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
49008586 |
gtgcattaaacttcactcagaagaatatcgcagccatcacgagatcgtcttttaacaattgttctaacccttctttggaccttaattacccttcttttat |
49008685 |
T |
|
| Q |
501 |
ttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagcc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008686 |
ttcctttttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagcc |
49008785 |
T |
|
| Q |
601 |
aacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaa |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49008786 |
aacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatgaa |
49008857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 107 - 501
Target Start/End: Complemental strand, 21687100 - 21686706
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagccc |
206 |
Q |
| |
|
|||| ||||||||||| ||| || ||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| | |||||||||| |
|
|
| T |
21687100 |
tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatggttggagccc |
21687001 |
T |
|
| Q |
207 |
agcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcacct |
306 |
Q |
| |
|
|| | ||||| ||||| || ||||||||||||||||| |||||||| || || |||| |||| ||||||||| |||||| ||||| |||| | ||| |
|
|
| T |
21687000 |
gtcatctattaggtcggcaattatgacaacatcagacatattagacaatactaaggaacatatcaaagacattggaaatggtaacagagcagcaactcct |
21686901 |
T |
|
| Q |
307 |
ttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcat |
406 |
Q |
| |
|
|| || |||||||| || ||||| || || |||||||||||||||||||| |||||||||||| || |||||||||| | |||||||| |||||| |
|
|
| T |
21686900 |
tttgcattgggagctggtcatattaaccctaatagagcacttgatcctggtcttgtttatgatatcggtgtacaagattatattaatcttctttgtgcac |
21686801 |
T |
|
| Q |
407 |
taaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt |
501 |
Q |
| |
|
| |||||||| || || || ||| |||| || ||||| ||||| || |||| ||| | ||||| || || ||||| ||||||||||||||| |
|
|
| T |
21686800 |
ttaacttcacacaaaaaaacatcagtgccattacaagatcttctttcaatgattgctctaaaccttccttagatcttaactacccttcttttatt |
21686706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 110 - 416
Target Start/End: Original strand, 8963150 - 8963456
Alignment:
| Q |
110 |
tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagc |
209 |
Q |
| |
|
||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||| | || || ||||||||| | |
|
|
| T |
8963150 |
tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttttgaaaggagcacatgctgattggagcccgac |
8963249 |
T |
|
| Q |
210 |
agccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcaccttta |
309 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||| || || ||||| || ||||| |||| ||||||||| || | | ||| | |||| ||||||| |
|
|
| T |
8963250 |
agctattaggtcggcaatgatgacaacatcagacatatttgataacactaaggaacttatcaaagacattggaaaagataacatagcagcaacacctttt |
8963349 |
T |
|
| Q |
310 |
gctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaa |
409 |
Q |
| |
|
|| |||||||| || |||||||| || |||| ||||||||| ||||| |||||||||||| || |||||||||||| ||| |||| |||||| | | |
|
|
| T |
8963350 |
gcattgggagctggtcatatcaaccctaataaagcacttgaccctggtcttgtttatgatattggtgtacaagattatgttaattttctttgtgcactta |
8963449 |
T |
|
| Q |
410 |
acttcac |
416 |
Q |
| |
|
||||||| |
|
|
| T |
8963450 |
acttcac |
8963456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 107 - 501
Target Start/End: Original strand, 8974543 - 8974937
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
204 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
|
|
| T |
8974543 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
8974640 |
T |
|
| Q |
205 |
ccagcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcac |
304 |
Q |
| |
|
|| ||||| ||||| || || |||||||||||||||||||| || || || || || |||||||| | ||||||||| || ||| ||| ||| ||| |
|
|
| T |
8974641 |
cctgcagctattaggtcagcaatgatgacaacatcagacatatttgataatactaaggaactcataaaagacattggaaaaggtaacaacgtagcaacac |
8974740 |
T |
|
| Q |
305 |
ctttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgc |
404 |
Q |
| |
|
|||| || ||||| || |||||||| ||||| | ||||||| | ||||||||||||||||||| || |||||||||||| |||||||| ||||| |
|
|
| T |
8974741 |
cttttgcacaaggagctggtcatatcaaccccaacaaagcacttaaccctggacttgtttatgatgttggtgtacaagattatgtcaatcttctttgtgc |
8974840 |
T |
|
| Q |
405 |
attaaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatt |
501 |
Q |
| |
|
| | |||||||| || || || ||| | ||| || ||||| ||| ||| |||||||| | ||||| ||||| || |||||||||||||||||| |
|
|
| T |
8974841 |
actcaacttcacacaaaaaaacatcactatcattacaagatcttctactaatgattgttctaaaccttcgttggatctcaattacccttcttttatt |
8974937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 513
Target Start/End: Complemental strand, 8945712 - 8945531
Alignment:
| Q |
332 |
atcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcattaaacttcactcagaagaatatcgc |
431 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| || |||||||||||| |||||||| |||||| | |||||||| || || || ||| | |
|
|
| T |
8945712 |
atcccaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgttaatcttctttgtgcacttaacttcacacaaaaaaacatcac |
8945613 |
T |
|
| Q |
432 |
gcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttttcaat |
513 |
Q |
| |
|
| || || ||||| ||||| || |||||||| | ||||| ||||| |||||||||||||||||||| | ||||||||| |
|
|
| T |
8945612 |
tacgattacaagatcctctttcaatgattgttctaaaccttccttggatcttaattacccttcttttatagcttttttcaat |
8945531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 107 - 671
Target Start/End: Original strand, 8958133 - 8958694
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagccc |
206 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| ||| ||||||| || ||||||||||| || |||||||| |||| | ||| | ||||||||| |
|
|
| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttttgaaaggagcacacggtgattggagccc |
8958232 |
T |
|
| Q |
207 |
agcagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcacct |
306 |
Q |
| |
|
|| || ||| | ||||| || |||||||| || ||||| | || || || || |||| || | ||||||||| |||| | | | | |||| | ||| |
|
|
| T |
8958233 |
tgccgcgattcggtcggcaattatgacaacgtcggacataattgataatactaaggaacatattaaagacattggaaatgataataaagcagcaactcct |
8958332 |
T |
|
| Q |
307 |
ttagctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcat |
406 |
Q |
| |
|
|| || |||||||| || ||| | ||||| |||||||||||||| ||||| ||| ||||||||| || |||||||||||| |||||||| |||||| |
|
|
| T |
8958333 |
tttgcattgggagctggtcatgttaatccaaatagagcacttgaccctggtcttatttatgatgttggtgtacaagattatgttaatcttctttgtgcac |
8958432 |
T |
|
| Q |
407 |
taaacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctt |
506 |
Q |
| |
|
| | || | | || || || ||| | ||||||| ||||| |||| || |||| ||||| ||||||||||| ||||| ||||||||||||||| | || |
|
|
| T |
8958433 |
ttagctactcacaaaaaaacatcactgccatcacaagatcttcttcgaatgattgctctgaaccttctttggatcttaactacccttcttttattgcatt |
8958532 |
T |
|
| Q |
507 |
tttcaataatgctagtgttaaatcaaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacatt |
606 |
Q |
| |
|
||| |||||| | | | |||| | | || ||||||||||| |||||| | ||||||||||| |||| | ||| | || || | | |||| |
|
|
| T |
8958533 |
cttcgataatgggaattcttcttcaagg---acaacccaagaatttcatagaacaattaccaatgttggtgagggagaaacagtttatgtttctagcatt |
8958629 |
T |
|
| Q |
607 |
acacctattgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
671 |
Q |
| |
|
|| | |||||||||||||||| ||||||||||||||||||||||| || || ||||| ||||| |
|
|
| T |
8958630 |
actcaggttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga |
8958694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 656
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
| Q |
598 |
gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt |
656 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
9947920 |
gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt |
9947862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 8945937 - 8945860
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
184 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||| | ||||||||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
8945937 |
tcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaag |
8945860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 656
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
| Q |
544 |
caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa |
643 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| || | |||| || || || | ||||| ||| ||||||| | || |||||||| |||||||| |
|
|
| T |
8945503 |
caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa |
8945404 |
T |
|
| Q |
644 |
acaagttggtgtt |
656 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
8945403 |
ataagttgatgtt |
8945391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 656
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
| Q |
616 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
656 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8975049 |
gaagggttccatgttagagttatcccaaataagttggtgtt |
8975089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 109 - 513
Target Start/End: Complemental strand, 34962715 - 34962314
Alignment:
| Q |
109 |
ttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccag |
208 |
Q |
| |
|
|||| ||| ||||| ||| ||||||||||||| ||| | || || || ||||||||||| || || ||||| |||| | |||| | ||||||||||| |
|
|
| T |
34962715 |
ttcagcaaattcaatttgataagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccag |
34962616 |
T |
|
| Q |
209 |
cagccattagatcggctatgatgacaacatcagacatgttagacaacacaaaagaactcatcacagacattggtaatggttacagaccagcttcaccttt |
308 |
Q |
| |
|
|||| ||| | ||||| || ||||||||||||||||| || || || | || |||| |||| ||||||||| | | ||| | |||| ||||||| |
|
|
| T |
34962615 |
cagcaattcggtcggcaataatgacaacatcagacatatttgataattctaaggaacaaatcaaagacattggaacag---acaaagcagcaacaccttt |
34962519 |
T |
|
| Q |
309 |
agctttgggagccggacatatcaatcccaatagagcacttgatcctggacttgtttatgatgcaggaaaacaagattatgtgaatcttctatgtgcatta |
408 |
Q |
| |
|
|| |||||||| || ||| | ||||| |||||||||||||| ||||| ||||||||||||| || ||||||||||||||||||||| |||||| | |
|
|
| T |
34962518 |
tgcattgggagctggtcatgttaatcctaatagagcacttgaccctggtcttgtttatgatgttggtgtacaagattatgtgaatcttctttgtgcactt |
34962419 |
T |
|
| Q |
409 |
aacttcactcagaagaatatcgcgcccatcacgagatcgtcttttaacaattgttctgacccttctttggaccttaattacccttcttttatttcctttt |
508 |
Q |
| |
|
|| | | | || || || ||| | ||||||| ||||| |||| || |||||||| | ||||| ||||| ||||| ||||||||||||||| | |||| |
|
|
| T |
34962418 |
aaatactcacaaaaaaacatcactaccatcacaagatcctcttccaatgattgttctaaaccttccttggatcttaactacccttcttttattgcttttt |
34962319 |
T |
|
| Q |
509 |
tcaat |
513 |
Q |
| |
|
||||| |
|
|
| T |
34962318 |
tcaat |
34962314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 627 - 671
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
| Q |
627 |
tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
671 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
25927991 |
tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga |
25927947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 19375811 - 19375734
Alignment:
| Q |
107 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
184 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||| |||||| |||| |
|
|
| T |
19375811 |
tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaag |
19375734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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