View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_1 (Length: 511)
Name: NF2258_high_1
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 3924821 - 3925024
Alignment:
| Q |
288 |
cttttggaaaaatatatatacttcctctttcttttttataggattatttcacaaaaatcttgaatattatgaaaagttgtccaagtaataaatttacgac |
387 |
Q |
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| T |
3924821 |
cttttgaaaaaatatatatacttcctctttcttttttataggattattttacaaaaatcttgaatattatgaaaagttgtccaagtaataaatttacgac |
3924920 |
T |
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| Q |
388 |
gaatatataggactattattaagttgttcttagtgtatagatatattcaatgggagcttattaaattttaagataaattgacaatattaattagggatat |
487 |
Q |
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| T |
3924921 |
gaatatataggactattattaagttgatcttagtgtatagatatattcaatgtgaacttattaaatattaagataaattgacaatattaattagggatat |
3925020 |
T |
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| Q |
488 |
attt |
491 |
Q |
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|||| |
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| T |
3925021 |
attt |
3925024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 3924546 - 3924732
Alignment:
| Q |
16 |
ataaatggcatgatatggcccctcatttattgatttatccctttgtcttcttctggatgttgagtgagaatcaacatcctctccannnnnnnaatatttc |
115 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
3924546 |
ataaatggcattatatggcccctcatttattgattgatccctttgtcttcttctgggtgttgagtgagaatcaacatcctctcca-ttttctaatctttt |
3924644 |
T |
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| Q |
116 |
cacttcttcaatttaaagagataatgacgtaaannnnnnnaaaataataaatattattgaaactcgtttagtgataggatcaactaca |
203 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||| |||| ||||| ||||| |||||||||||||||||||||| |
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| T |
3924645 |
cacttcttcaatttaaagagataaagacgtaaatttttttaaaataattaataatattgtaactcatttagtgataggatcaactaca |
3924732 |
T |
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