View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2258_high_12 (Length: 340)

Name: NF2258_high_12
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2258_high_12
NF2258_high_12
[»] chr5 (10 HSPs)
chr5 (1-325)||(35754518-35754842)
chr5 (1-322)||(35423372-35423693)
chr5 (1-322)||(35376113-35376434)
chr5 (1-310)||(35366579-35366888)
chr5 (114-317)||(35406304-35406507)
chr5 (1-264)||(35370007-35370274)
chr5 (1-108)||(35410594-35410701)
chr5 (72-162)||(35385214-35385304)
chr5 (47-211)||(35436831-35436995)
chr5 (1-79)||(35385962-35386040)
[»] chr1 (4 HSPs)
chr1 (1-322)||(10415849-10416170)
chr1 (8-310)||(10420743-10421045)
chr1 (1-179)||(10410158-10410336)
chr1 (199-312)||(10410332-10410447)
[»] chr7 (1 HSPs)
chr7 (1-307)||(29623290-29623596)
[»] chr2 (3 HSPs)
chr2 (1-322)||(30662729-30663050)
chr2 (1-275)||(30625825-30626099)
chr2 (1-275)||(30671456-30671730)
[»] chr8 (1 HSPs)
chr8 (3-177)||(13564482-13564656)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 35754842 - 35754518
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35754842 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagattcaacacctttacaacaataggt 35754743  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754742 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 35754643  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  35754642 cataagtaaccctcaacttctcatttcgcaaagatggtgaagaaggcaactttttggactttctcatgagaaaatgaacagttatagaagctatgaaaga 35754543  T
Q  301 gatcaaaaccccaccaagtacaatg 325  Q
    |||||||||||||||||||||||||    
T  35754542 gatcaaaaccccaccaagtacaatg 35754518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 35423693 - 35423372
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| ||||||||||||||||| || |||||||||||| | |||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  35423693 aagattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggt 35423594  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
     ||||||||| ||||||||||||||| |||||||| || ||||||||||| || |||||||||| ||||||||||||||  |||||||||| ||||||||    
T  35423593 ttttcaaagtagagaagagatcctttgtaaacagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctc 35423494  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    ||||||||||||||||  || | |||  ||| |||||||||||||  ||| |||||| ||||||| ||||||| |||||| || |||||||||||| |||    
T  35423493 cataagtaaccctcaagctcccgtttatcaaagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacaattgtaaaagctatgacaga 35423394  T
Q  301 gatcaaaaccccaccaagtaca 322  Q
    ||||| ||||||||||| ||||    
T  35423393 gatcacaaccccaccaattaca 35423372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 35376434 - 35376113
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| ||||||||||||||||| || |||||||||||||| |||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||    
T  35376434 aagattacggtgcttcatctttcctaaagcattgcattccgcaatgaaactctttgctgctccacgtgtttcaagattcaacacctttacagcaataggt 35376335  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
     ||||||||| ||||| ||||||||| |||||||| || ||||||||||| || |||||||||| ||||||||||||||  |||||||||| ||||||||    
T  35376334 ttttcaaagtagagaatagatcctttgtaaacagaaccgaagcttcctgtaccgaccaaattggatgaagaaaatccattggttgcttcatgtagctctc 35376235  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    ||||||||||||||||  || | |||  ||| |||||||||||||  ||| |||||| ||||||| ||||||| |||||  || |||||||||||| |||    
T  35376234 cataagtaaccctcaagctcccgtttatcaaagatggtgaagaagataaccttttgggctttctcgtgagaaagtgaacgattgtaaaagctatgacaga 35376135  T
Q  301 gatcaaaaccccaccaagtaca 322  Q
    ||||| ||||||||||| ||||    
T  35376134 gatcacaaccccaccaattaca 35376113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 35366888 - 35366579
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| ||||||||||||||||| |  || |  ||||| ||| ||||||| |||| |||||||||||||| |||||| ||||||||||||||||| |||    
T  35366888 aagatttcggtgcttcatctttcctagagcttcacattctgctttgaaactctttgctgctccacgtgttttaagattcaacacctttacaacaatgggt 35366789  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
     ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||    
T  35366788 ttttcaaagttgagaagagatcctttgtaaacagaaccaaaacttcctgttccaaccaaattggatgaagaaaagccatcggttgcttcatgtagctctc 35366689  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
     |||||||| | |||| ||| | ||| |||| |||||||||||||| ||| |||||| ||||||    |||||||| | | |||||||| ||||||||||    
T  35366688 tataagtaatcatcaaattccctttttgcaaagatggtgaagaaggtaacattttggtctttcttggaagaaaatggaaaattataaaaactatgaaaga 35366589  T
Q  301 gatcaaaacc 310  Q
    ||||||||||    
T  35366588 gatcaaaacc 35366579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 114 - 317
Target Start/End: Complemental strand, 35406507 - 35406304
Alignment:
Q  114 gaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctccataagtaaccct 213  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| ||||  |||||||||| |||||||||||||||||||||    
T  35406507 gaagagatcctttgtaaacagagccaaagcttcctgttcctaccaaattggaagaagaaaaaccattggttgcttcatgtagctctccataagtaaccct 35406408  T
Q  214 caacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaagagatcaaaacccca 313  Q
    ||| |||||||||||||| ||||||||||| || ||| |||||||||||||| |||||||||||||| ||||||||| ||||| |||||||| || ||||    
T  35406407 caatttctcatttcgcaaagatggtgaagatggtaaccttttggactttctcgtgagaaaatgaacaattataaaagttatgacagagatcacaaaccca 35406308  T
Q  314 ccaa 317  Q
    ||||    
T  35406307 ccaa 35406304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 35370274 - 35370007
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcat--tccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaatag 98  Q
    |||||| |||||| |||||||||| || |||||||||  ||||| |||||||| |||| ||||||||||||||||||||| ||||||||||  |||||||    
T  35370274 aagattacggtgcctcatctttcctaaagcattgcatattccgcaatgaaactctttgctgctccacgtgtttcaagattcaacacctttaacacaatag 35370175  T
Q  99 gtctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctc 198  Q
    |||||||||||||  ||||||||||||| |||||||| |||||||||| ||| ||||||||||||| ||||||||| |||   |||||||||| ||||||    
T  35370174 gtctttcaaagtttggaagagatcctttgtaaacagagccaaagcttcatgtaccaaccaaattggatgaagaaaacccaatggttgcttcatgtagctc 35370075  T
Q  199 tcc--ataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttct 264  Q
    |||  ||| |||||||||||  || | |||  ||| |||||||||||||| ||| |||||| ||||||    
T  35370074 tccatataggtaaccctcaagctcccgtttatcaaagatggtgaagaaggtaaccttttgggctttct 35370007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35410701 - 35410594
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| |||||| |||||||||  || |||||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  35410701 aagattacggtgcctcatctttcttaaagcattgcattccgccatgaaactctttgttgcttcacgtgtttcaagattcaacacctttacaacaataggt 35410602  T
Q  101 ctttcaaa 108  Q
    ||||||||    
T  35410601 ctttcaaa 35410594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 35385304 - 35385214
Alignment:
Q  72 caagatttaacacctttacaacaataggtctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaatt 162  Q
    ||||||| || ||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35385304 caagattcaagacctttatagcaatagggctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgctccaaccaaatt 35385214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 211
Target Start/End: Complemental strand, 35436995 - 35436831
Alignment:
Q  47 aaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggtctttcaaagttgagaagagatcctttataaacagatccaaagcttc 146  Q
    ||||| |||| ||| |||||||||||||| || ||||||||||| |||||||||| |||||| || |||||||||||||| || ||||| ||||| ||||    
T  35436995 aaactctttgatgccccacgtgtttcaagtttcaacacctttactacaataggtccttcaaatttaagaagagatcctttgtatacagaaccaaaacttc 35436896  T
Q  147 ctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctccataagtaacc 211  Q
    |||  || ||||| |||| |||||||||||| |  |||||||||| ||  ||  |||||||||||    
T  35436895 ctgcgcctaccaagttggatgaagaaaatccgttggttgcttcatgtaaatcctcataagtaacc 35436831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 35386040 - 35385962
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagattt 79  Q
    ||||||| ||||||||||||||||||  ||||||||||| || |||||||| |||| ||||||||||||||||||||||    
T  35386040 aagattctggtgcttcatctttcccagagcattgcattctgccatgaaactctttgctgctccacgtgtttcaagattt 35385962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 10415849 - 10416170
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| ||||||||||||||||| || |||||||||||| | |||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||    
T  10415849 aagattacggtgcttcatctttcctaaagcattgcattcctccatgaaactctttgctgctccacgtgtttcaagattcaacacctttacaacaataggt 10415948  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    ||||||||| |  ||||||||||||| |||||||| ||||||||||||||||| ||||||||||  |||||||| ||||  |||| ||||| ||||||||    
T  10415949 ctttcaaagcttggaagagatcctttgtaaacagagccaaagcttcctgttcctaccaaattggaagaagaaaaaccattggttgattcatgtagctctc 10416048  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    |||||||||||||||| ||| | |||||||| ||||||||||| || ||  |||||||||||||  |||||||||||||| ||||||||||||||| |||    
T  10416049 cataagtaaccctcaatttcccgtttcgcaaagatggtgaagatggtaagcttttggactttcttgtgagaaaatgaacaattataaaagctatgacaga 10416148  T
Q  301 gatcaaaaccccaccaagtaca 322  Q
    ||||| || |||||||| ||||    
T  10416149 gatcacaaacccaccaattaca 10416170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 8 - 310
Target Start/End: Original strand, 10420743 - 10421045
Alignment:
Q  8 cggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggtctttcaa 107  Q
    ||||| ||||||||||| |  || | || ||| ||| ||||||| |||| | |||||| ||||| |||||| || |||||||||||||| ||| ||||||    
T  10420743 cggtgtttcatctttcctagagcttcgcgttctgctttgaaactctttgctcctccacatgttttaagattcaatacctttacaacaatgggtttttcaa 10420842  T
Q  108 agttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctccataagt 207  Q
    |||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||| ||||  |||||||||| |||||||| ||||||    
T  10420843 agttaagaagagatcctttgtaaacagaaccaaaacttcctgttccaaccaaattggatgaagaaaacccattggttgcttcatgtagctctctataagt 10420942  T
Q  208 aaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaagagatcaaa 307  Q
    || | |||| ||| | ||| || | |||||||||||||| ||| |||||| ||||||    |||||||  | | |||||||| |||||||||||||||||    
T  10420943 aatcatcaaattccctttttgcgaagatggtgaagaaggtaacattttggtctttcttgaaagaaaatagaaaattataaaaactatgaaagagatcaaa 10421042  T
Q  308 acc 310  Q
    |||    
T  10421043 acc 10421045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 10410158 - 10410336
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||||||||||||||| |||||||  || ||||||||| | | |||||| |||  ||||||| ||||||||||||| |||||||||||||||||||||    
T  10410158 aagattccggtgcttcatgtttcccagagctttgcattccaccacgaaactctttactgctccaggtgtttcaagattcaacacctttacaacaataggt 10410257  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccat 179  Q
    |||||||||| ||||||||||||||| |||||||| ||||| | |||| | || |||||||||| ||||||||||||||    
T  10410258 ctttcaaagtagagaagagatcctttgtaaacagaaccaaatcctcctctacctaccaaattggatgaagaaaatccat 10410336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 10410332 - 10410447
Alignment:
Q  199 tccataagtaaccctcaacttctcatttcgcaacgatggtgaagaag--gcaac-tttttggactttctcatgagaaaatgaacatttataaaagctatg 295  Q
    ||||||||||||||||||  || |||||  |||  ||||||||||||  | ||| |||||||| |||||| |||||||||||||| ||||||||||||||    
T  10410332 tccataagtaaccctcaagctcccatttatcaaaaatggtgaagaagaggtaacctttttgga-tttctcgtgagaaaatgaacaattataaaagctatg 10410430  T
Q  296 aaagagatcaaaacccc 312  Q
    | ||| |||| ||||||    
T  10410431 acagaaatcacaacccc 10410447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29623290 - 29623596
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||||||||| ||||||||||| |  |  || ||||| || |||||||| |||| ||||||||||||||||||||| ||||||||||   ||||||||    
T  29623290 aagattccggtgtttcatctttcctagagatttacattctgcaatgaaactctttgctgctccacgtgtttcaagattcaacacctttatggcaataggt 29623389  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    |||  ||||||| ||||||||||| | || ||||||||||||||||||| ||| | |||||| | ||||||| ||||||  |||||||||| ||| ||||    
T  29623390 cttcgaaagttgggaagagatcctatgtagacagatccaaagcttcctgctcctaacaaattagatgaagaatatccattggttgcttcatgtaggtctc 29623489  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    |||||||||||||||| ||||||||| |||| ||||||||||| || ||| |||||| ||||||  ||||||||||  || |||||||||||||||||||    
T  29623490 cataagtaaccctcaaattctcattttgcaaagatggtgaagagggtaaccttttgggctttcttgtgagaaaatgggcaattataaaagctatgaaaga 29623589  T
Q  301 gatcaaa 307  Q
     ||||||    
T  29623590 tatcaaa 29623596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 30663050 - 30662729
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| |||||||||||||||||||| || |||||||| ||| ||||||| ||||| |||||||||| || |||||| |||||||||||||||||||||    
T  30663050 aagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggt 30662951  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    ||||||||||  || ||||||||||| ||||| ||  ||||||||||||| || |||||||||| ||||||||| ||||  || || |||| || ||| |    
T  30662950 ctttcaaagtaaaggagagatcctttgtaaacggaggcaaagcttcctgtccctaccaaattggatgaagaaaacccattggtggcctcatgtatctcac 30662851  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaatgaacatttataaaagctatgaaaga 300  Q
    ||||||||||||| || ||| |||||  ||| |||||| ||| ||| | | ||||||||||||||  |||||||| || | | || ||| ||  ||||||    
T  30662850 cataagtaaccctgaagttcccatttttcaaagatggtaaagtaggtagccttttggactttctcgcgagaaaataaagaataatcaaaactgcgaaaga 30662751  T
Q  301 gatcaaaaccccaccaagtaca 322  Q
    ||| ||||| ||||||| ||||    
T  30662750 gattaaaacgccaccaactaca 30662729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30626099 - 30625825
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| |||||||||||||||||||| || |||||||| ||| ||||||| ||||| |||||||||| || |||||| |||||||||||||||||||||    
T  30626099 aagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggt 30626000  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    ||||||||||  || ||||||||||| ||||||||  ||||||||||||| || |||||||| | ||||||||| ||||  || || |||| || ||| |    
T  30625999 ctttcaaagtaaaggagagatcctttgtaaacagaggcaaagcttcctgtccctaccaaatttgatgaagaaaacccattggtggcctcatgtatctcac 30625900  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaat 275  Q
    ||||||||||||| || ||| |||||  | | |||||| ||| ||| | | ||||||||||||||  ||||||||    
T  30625899 cataagtaaccctgaagttcccatttttctaagatggtaaagtaggtagccttttggactttctcgcgagaaaat 30625825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 30671730 - 30671456
Alignment:
Q  1 aagattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggt 100  Q
    |||||| |||||||||||||||||||| || |||||||| ||| ||||||| ||||| |||||||||| || |||||| |||||||||||||||||||||    
T  30671730 aagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactctttgtagctccacgtgcttgaagattcaacacctttacaacaataggt 30671631  T
Q  101 ctttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatccatcagttgcttcatatagctctc 200  Q
    ||||||||||  || ||||||||||| ||||||||  ||||||||||||| || |||||||| | ||||||||| ||||  || || |||| || ||| |    
T  30671630 ctttcaaagtaaaggagagatcctttgtaaacagaggcaaagcttcctgtccctaccaaatttgatgaagaaaacccattggtggcctcatgtatctcac 30671531  T
Q  201 cataagtaaccctcaacttctcatttcgcaacgatggtgaagaaggcaactttttggactttctcatgagaaaat 275  Q
    ||||||||||||| || ||| |||||  | | |||||| ||| ||| | | ||||||||||||||  ||||||||    
T  30671530 cataagtaaccctgaagttcccatttttcgaagatggtaaagtaggtagccttttggactttctcgcgagaaaat 30671456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 177
Target Start/End: Complemental strand, 13564656 - 13564482
Alignment:
Q  3 gattccggtgcttcatctttcccaatgcattgcattccgctatgaaactttttgttgctccacgtgtttcaagatttaacacctttacaacaataggtct 102  Q
    |||| ||||||||||||||||| || || |||||||| ||  | ||||| || | ||||| ||||||||||||||| ||||| |||||||||||||||||    
T  13564656 gatttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactcttcgctgctcaacgtgtttcaagattcaacacttttacaacaataggtct 13564557  T
Q  103 ttcaaagttgagaagagatcctttataaacagatccaaagcttcctgttccaaccaaattggctgaagaaaatcc 177  Q
    |||||| | |  || ||||||||| |||||||| |||||||||  ||| || | || ||||| ||||||||||||    
T  13564556 ttcaaaataggaaatagatcctttgtaaacagaaccaaagcttattgtacctatcagattggatgaagaaaatcc 13564482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University