View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_15 (Length: 325)
Name: NF2258_high_15
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 33369182 - 33368885
Alignment:
| Q |
16 |
atgaaggggatgtagcaacgccatataaataagaatttcataacgtgctaaaataaaaatatattcagagnnnnnnnnn-tcccacctgattttttatat |
114 |
Q |
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| T |
33369182 |
atgaaggggatgtagcaacgccatataaataagaatttcataacgtgctaaaataaaaatatattcagagaaaaaaaaaatcccacctgattttttatat |
33369083 |
T |
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| Q |
115 |
at--gtataaaaagtgaaaactgacttaagatagtgtatagttgtccccaatgatatggcattttgataatctttctt--acccacggggtcaccatcat |
210 |
Q |
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| T |
33369082 |
atatgtataaaaagtgaaaactgacttgagatagtgtatagttgtctccaatgatatggcattttgataatctttcttttacccaccgggtcaccatcat |
33368983 |
T |
|
| Q |
211 |
ctcatacattattcacatgatcaatgacctcagcattcctacatgattaatataattgccaacacttagttaaacctaattttatatatgatcacatt |
308 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33368982 |
ctcatacattattcacatgattaatgacctcagcattcctacatgattaatataattgccaacacttagttaaacctaattttatatatgatcacatt |
33368885 |
T |
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