View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_20 (Length: 285)
Name: NF2258_high_20
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 2754867 - 2755101
Alignment:
| Q |
13 |
aatatgtgtgccaacctgaaaccatgaacagaaatcttaattttgattggaaaattacataattgtgacttctattgttcatataggtttgtaaataact |
112 |
Q |
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| T |
2754867 |
aatatgtgtgccaacctgaaaccatgaacagaaatcttaattttgattggaaaattgcataattgtgacttctattgttcatataggtttgtaaataact |
2754966 |
T |
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| Q |
113 |
catcacactagtgcttaattacaag--atattatctctcaatgtttaaaaaatcaatcagaacggagatcaaacaaactacgactcagaccagttcaacg |
210 |
Q |
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| T |
2754967 |
catcacactagtgcttaattacaagatatattatctctcaatgtttaaaaaatcaatcagaacggagatcaaacaaactacgactcggaccagttcaacg |
2755066 |
T |
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| Q |
211 |
agactctactataaccgggattaagccaattcaac |
245 |
Q |
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| T |
2755067 |
agactctactataaccaggattaagccaattcaac |
2755101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 2747070 - 2747150
Alignment:
| Q |
15 |
tatgtgtgccaacctgaaaccatgaacagaaatcttaattttga---ttggaaaattacataattgtgacttctattgttc |
92 |
Q |
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|||||||||||||||||||| || |||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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| T |
2747070 |
tatgtgtgccaacctgaaacaataaacataaatcttaattttgattgttggacaatgacataattgtgacttctattgttc |
2747150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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