View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_21 (Length: 267)
Name: NF2258_high_21
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 25303868 - 25304106
Alignment:
| Q |
20 |
ataggtgctcctatctcataaccaaataaccattatcagacaccagttttataactttcttgactttacctctcgaaacagtggacatgtaaaagaacct |
119 |
Q |
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| T |
25303868 |
ataggtgctcctatctcataaccaaataaccattatcaaacaccagttttgtaactttcttgactttacctctagaaacagtggacatgtaaaagaacct |
25303967 |
T |
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| Q |
120 |
tgtattcacgtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccgtatattct |
219 |
Q |
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| T |
25303968 |
tctattcacgtccctttgtttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctgaataacaagccgagcacacttctccatattttct |
25304067 |
T |
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| Q |
220 |
tctaaatgatttgtattcaaacgatcgggttgcctatgc |
258 |
Q |
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| T |
25304068 |
tctaaatgatttgtattcacacgattaggttgcctatgc |
25304106 |
T |
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Back To:
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 7124523 - 7124477
Alignment:
| Q |
139 |
ttcaaccagtgcatcttagctctttgtttccaaaaggcctcctcctg |
185 |
Q |
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| T |
7124523 |
ttcaaccagtgcatttttgctctttgcttccaaaacgcctcctcctg |
7124477 |
T |
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