View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_28 (Length: 234)
Name: NF2258_high_28
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 9359521 - 9359327
Alignment:
| Q |
24 |
tcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgactt |
123 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
9359521 |
tcatcaaacatgtgatgcaattactaatacaaataaccaaacatattgtccaccttcttcatgcggcaaaatcacaaacatatcacatccttttcgactt |
9359422 |
T |
|
| Q |
124 |
aagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
9359421 |
atgaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcaccgtgttaactctgttttcaggtaaatactatgt |
9359327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 9335783 - 9335589
Alignment:
| Q |
24 |
tcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgactt |
123 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||| || ||||||| ||||| |||||| ||||||||| |
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| T |
9335783 |
tcatcaaacatgtgatgcaattactaatacaaataacaaaacatattgtccaccttcttcatgcggcaaaatcagcaacatcaaacatccgtttcgactt |
9335684 |
T |
|
| Q |
124 |
aagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
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|
|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
9335683 |
aagaatgacccagcaacctgtggtgatccaaagtacgagttatcctgcgaaaacaacatcacagcgttaactctgttttcaggtaaatactatgt |
9335589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 8960169 - 8959975
Alignment:
| Q |
24 |
tcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgactt |
123 |
Q |
| |
|
||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
8960169 |
tcatcaaacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaattggaaacatatcacatccttttcgactt |
8960070 |
T |
|
| Q |
124 |
aagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
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||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |
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| T |
8960069 |
aaggatgacccaacatcatgtggtgatccgaggtacgagttatcctgcgaaaacaacatcacaaccttaactttgttgtcgggtaaatactatgt |
8959975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 218
Target Start/End: Complemental strand, 8936648 - 8936454
Alignment:
| Q |
24 |
tcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgactt |
123 |
Q |
| |
|
||||||||||| |||||||||||| ||||| | ||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||| |
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| T |
8936648 |
tcatcaaacatgtgatgcaattacaaatactagtaaccaaacattctgtccaccttcttcatgcggcaaaatcacaaacataacacatccatttcgactt |
8936549 |
T |
|
| Q |
124 |
aagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
|
||| |||| |||||| ||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
8936548 |
aaggatgatccaacatcatgtggtgatccaaggtatgagttatcctgcgaaaacaacatcacaatgttaactctgttgtcgggtaaatactatgt |
8936454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 9244945 - 9245133
Alignment:
| Q |
27 |
tcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttaag |
126 |
Q |
| |
|
|||||| | |||||| ||||||||| ||| |||||||| || ||||||||||||||||||| ||||||| ||||| |||||| |||||||||| | |
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| T |
9244945 |
tcaaacttgtgatgccattactaattcaaataaccaaatat---gtccaccttcttcatgtggaaaaatcagcaacatcaaacatccgtttcgacttatg |
9245041 |
T |
|
| Q |
127 |
aatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9245042 |
aatgacccaacaagctgtggtgatccgaagtatgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaagtactatgt |
9245133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 8925017 - 8924813
Alignment:
| Q |
14 |
atcatcctcctcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatcc |
113 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||| |||||| | |||| |
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|
| T |
8925017 |
atcatcatcatcatcaaacatgtgatgcaattacaaatactagtaaccaaacatattgtccaccttcttcatgtggcaaaatcaacaacataaaatatcc |
8924918 |
T |
|
| Q |
114 |
ttttcgacttaagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatac |
213 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| || ||| |||||||| |
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| T |
8924917 |
gtttcgacttaagaatgatccaacaacctgtggtgatccgaggtacgagttatcctgcgaaaacaacataacaactttaactctattgtcgagtaaatac |
8924818 |
T |
|
| Q |
214 |
tatgt |
218 |
Q |
| |
|
||||| |
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|
| T |
8924817 |
tatgt |
8924813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 9306719 - 9306913
Alignment:
| Q |
24 |
tcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgactt |
123 |
Q |
| |
|
|||||||| || | |||||||||||| ||| | ||||||||||||||||||| | || |||||||| | ||||| ||||||| |||||||||||||||| |
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|
| T |
9306719 |
tcatcaaagatgttatgcaattactattactaataaccaaacatattgtccatcctcatcatgtggcacaatcagaaacataaaacatccttttcgactt |
9306818 |
T |
|
| Q |
124 |
aagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
|
||||||| ||| ||| ||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |
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| T |
9306819 |
cagaatgatccagcaaactgcggtgatccgaggtatgagttatcctgcgaaaacaacatcacaacgttaactttgttttcaggtaaatactatgt |
9306913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 9475209 - 9475370
Alignment:
| Q |
57 |
taaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttaagaatgacccaacaagctgtggtgatccgaag |
156 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| ||||||||||| |||||| |||||||| |||||||| ||||||| |||||||||||||| | |
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| T |
9475209 |
taaccaaacaaattgtccaccttcttcatgtggcaaactcacaaacataaaacatccgtttcgactcaagaatgatccaacaacctgtggtgatccgagg |
9475308 |
T |
|
| Q |
157 |
tacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| || |||||||||| ||| |||| |
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|
| T |
9475309 |
tacgagttatcctgcgtaaacaacatcacaacgttaactttgctttcgggtaactacaatgt |
9475370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 221
Target Start/End: Complemental strand, 8946097 - 8945945
Alignment:
| Q |
69 |
ttgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttaagaatgacccaacaagctgtggtgatccgaagtacgagttatcc |
168 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |||||| |||| || |||||||||||||| ||| ||| ||| |||||||||| ||||||||||||| |
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|
| T |
8946097 |
ttgtcccccttcttcatgtggcaaaatcagcaacataaagtatcccttccgacttaagaatgatccagcaacctgcggtgatccgaggtacgagttatcc |
8945998 |
T |
|
| Q |
169 |
tgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgtaaa |
221 |
Q |
| |
|
|||||||| ||||||||| |||||| ||| |||| ||||||||| ||||||| |
|
|
| T |
8945997 |
tgcgaaaaaaacatcacaatgttaaagctgctttctggtaaataccatgtaaa |
8945945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 9168685 - 9168481
Alignment:
| Q |
14 |
atcatcctcctcatcaaacatatgatgcaattactaatacaattaaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatcc |
113 |
Q |
| |
|
|||||| || ||||||| ||| |||||||| || ||||| |||||||| || |||||||||||||||||||| ||||| | ||||||| |||||| |
|
|
| T |
9168685 |
atcatcatcatcatcaagcatgtgatgcaactagtaatagtgataaccaaaaattatgtccaccttcttcatgtggcaaaatgagaaacataaaacatcc |
9168586 |
T |
|
| Q |
114 |
ttttcgacttaagaatgacccaacaagctgtggtgatccgaagtacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatac |
213 |
Q |
| |
|
|| |||||||| ||||| ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| | ||| |||||||| |||||||||| |
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| T |
9168585 |
gttccgacttaaaaatgatccaacaaactgtggtgatccgaggtacgagttatcctgtgaaaacaacatcacaacgctaagtctgttttggggtaaatac |
9168486 |
T |
|
| Q |
214 |
tatgt |
218 |
Q |
| |
|
||||| |
|
|
| T |
9168485 |
tatgt |
9168481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 15912700 - 15912861
Alignment:
| Q |
57 |
taaccaaacatattgtccaccttcttcatgtggtaaaatcacaaacatatcacatccttttcgacttaagaatgacccaacaagctgtggtgatccgaag |
156 |
Q |
| |
|
|||| |||||| ||||||| |||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||| | | |||||| ||||||| |
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| T |
15912700 |
taacaaaacattttgtccaacttcttcatgcggtaaaatcagcaacataaaacatccatttcgacttaagaatgacccagcgacctgtggggatccgagc |
15912799 |
T |
|
| Q |
157 |
tacgagttatcctgcgaaaacaacatcacagtgttaactctgttttcgggtaaatactatgt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||| ||||| |||||||| |
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|
| T |
15912800 |
tacgagttatcctgcgaaaacaacatcacaaccttaaatctgttttcaggtaagtactatgt |
15912861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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