View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_high_7 (Length: 379)
Name: NF2258_high_7
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 42817059 - 42816698
Alignment:
| Q |
1 |
accgaggctaatgctttcttatattttacagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagt |
100 |
Q |
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| T |
42817059 |
accgaggctaatgctttcttatattttgcagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagt |
42816960 |
T |
|
| Q |
101 |
tctcaaccctttttctactggtaaatattaactgagcaagcactagtatatacggatttgaatataacttttgaattttgatccatattttgtaatgtct |
200 |
Q |
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| T |
42816959 |
tctcaaccctttttctactggtaaatattaactgagcaagcactagtatatacggatttgaatataacttttgaattttgatccatattttgtaatgtct |
42816860 |
T |
|
| Q |
201 |
taatacatgttttgctcacatgaaggttggatattggtgatggnnnnnnngtcaatcttgacatatgttcaagaaagaaattgcaaaggcaacgaataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42816859 |
taatacatgttttgctcacatgaaggttggatattggtgatggaaaaaaagtcaatcttgacatatgttcaagaaagaaattgcaaatgcaacgaataaa |
42816760 |
T |
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| Q |
301 |
ctatcttggacctgtaaattttttcattcacccacattgcattcaataactctagttaatat |
362 |
Q |
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| T |
42816759 |
ctatcttggacctgtaaattttttcattcacccacattgcattcaataactctagttaatat |
42816698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 17493062 - 17493158
Alignment:
| Q |
28 |
acagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagttctcaaccctttttctactggtaa |
124 |
Q |
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| T |
17493062 |
acagattgacccacgtcatcgctatggacacaatttgcacttatattatgatatttggtttgatagccaaagtactcaaccatttttctattggtaa |
17493158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 6005312 - 6005202
Alignment:
| Q |
15 |
tttcttatattttacagattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaagtgtcagagttctcaacccttttt |
114 |
Q |
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|||||| |||||| ||||||||||| |||||||| |||||||||||| | || || || ||| |||| ||||| | | ||||| || ||||| ||||| |
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| T |
6005312 |
tttcttgtattttgcagattgatccacgtcatcgatatggacacaatttacacttgtactataatgtttggttccatagccagagctcacaacctttttt |
6005213 |
T |
|
| Q |
115 |
ctactggtaaa |
125 |
Q |
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| T |
6005212 |
ctactggtaaa |
6005202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 52368672 - 52368612
Alignment:
| Q |
30 |
agattgatcctcgtcatcgctatggacacaatctgcatttctattatgatgtatggtttaa |
90 |
Q |
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||||||| || |||||||| |||||||||||||| ||| | ||||||||| | |||||||| |
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| T |
52368672 |
agattgacccgcgtcatcgatatggacacaatcttcatatgtattatgatatctggtttaa |
52368612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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