View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_10 (Length: 361)
Name: NF2258_low_10
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 81 - 350
Target Start/End: Complemental strand, 41980492 - 41980223
Alignment:
| Q |
81 |
catgcaaagagtattgggatttaaacctcagaggtgtctcggagagagtataaagcattgctatcttttctcgctgatgaaaccaatattccacaacctc |
180 |
Q |
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| T |
41980492 |
catgcaaagagtattgggatttaaacctcagaggtgtctcggagagagtataaagcattgctatcttttctcactgatgaaaccaatattccacaacctc |
41980393 |
T |
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| Q |
181 |
gattgctctcccgcagcacctaaatacagtcaaaaattttagaattataatctgtctgcagattaaagagaaaatagaaaatgttattctagactaatta |
280 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41980392 |
gattgctctcccgcagcacctaaatacattcaaaaattttagaattataatctgtctgcggattaaagagaaaatagaaaatgttattctagactaatta |
41980293 |
T |
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| Q |
281 |
aatccaataccttgaatgcgtcttcatctgttttatcatctccaatgtagataggaagcacatcattcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41980292 |
aatccaataccttgaatgcgtcttcatctgttttatcatctccaatgtagataggaagcacatcattcat |
41980223 |
T |
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