View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_13 (Length: 342)
Name: NF2258_low_13
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 11103004 - 11103315
Alignment:
| Q |
20 |
gctaattgttccattataataattatttttgacttaattctaattattaactataaatatgtaaagttcggctcataatattcctcatccatatgaaaaa |
119 |
Q |
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| T |
11103004 |
gctaattgttccattataataattatttttgacttaattctaattattaactataaatatgtaaagttcggctcataatattcctcatccatatgaaaaa |
11103103 |
T |
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| Q |
120 |
ttgtctcttcttctctccaaacaattaaatttcccactttcacatacgacccaaaagaaggaaaaaatatggctcgtgaggctcaatctataataaggtt |
219 |
Q |
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| T |
11103104 |
ttgtctcttcttctctccaaacaattaaatttcccactttcacatacgacccaaaagaaggaaaaaatatggctcatgaggctcaatctataataaggtt |
11103203 |
T |
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| Q |
220 |
attagtggtgctattgtttctgggttgtattatgatttggataatgatgcctacaaatactttcaatctaaaatggtttcctaaaatccgtggcaaagct |
319 |
Q |
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| T |
11103204 |
attagtggtgctattatttctgggttgtattatgatttggataatgatgcctacaaatactttcaatctaaaatggtttcctaaaatccgtggcaaagct |
11103303 |
T |
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| Q |
320 |
gatcctacctat |
331 |
Q |
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| T |
11103304 |
gatcctacctat |
11103315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 161 - 331
Target Start/End: Original strand, 11589592 - 11589762
Alignment:
| Q |
161 |
acatacgacccaaaagaaggaaaaaatatggctcgtgaggctcaatctataataaggttattagtggtgctattgtttctgggttgtattatgatttgga |
260 |
Q |
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| T |
11589592 |
acatacgacccaaaagaaggaaaaaatatgaatcgtgaggctcaatctataataaggttattagtggtgctattatttctgggttgtattatgatttgga |
11589691 |
T |
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| Q |
261 |
taatgatgcctacaaatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctat |
331 |
Q |
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| T |
11589692 |
taatgatgcccacaaatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctat |
11589762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 285
Target Start/End: Original strand, 11115062 - 11115145
Alignment:
| Q |
202 |
tcaatctataataaggttattagtggtgctattgtttctgggttgtattatgatttggataatgatgcctacaaatactttcaa |
285 |
Q |
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|||||||| |||||||||||| ||||| || |||||||||||| ||| | |||| ||||||||||||||| |||||||||| |
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| T |
11115062 |
tcaatctacaataaggttattgatggtgttactgtttctgggtttaattttcatttttataatgatgcctacatatactttcaa |
11115145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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