View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_16 (Length: 328)
Name: NF2258_low_16
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 325
Target Start/End: Complemental strand, 3925405 - 3925098
Alignment:
| Q |
18 |
actaaatatttaaaaatttgataattgtgatttaaactaacgctccaacgtatcaattgtctctctcaaaccttttatcatttgacttatatttcatgag |
117 |
Q |
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| T |
3925405 |
actaaatgtttgaaaatttgataattgtgatccaaactagcgttccaacgtatcaattatctctctcaaaccttttatcatttgacttgtattttatgag |
3925306 |
T |
|
| Q |
118 |
attaacttttaacgtcgataatataaaatgtttgatacatatatccaatcaaatcatagtgacactttcatattagtttctaaaatatctatacgtatat |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
3925305 |
attaacttttaacgtcgacaatataaaatgtttgatacatatatccaatcaaatcatagtgtcacttttatattagtttctaaaatatctatacgtatat |
3925206 |
T |
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| Q |
218 |
ctatatgatattaatttgattgaatgcatgtgtaaaatttaaattattttatttatttccctaataaagagttaaataannnnnnnacttcatccttatt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
3925205 |
ctatatgatattaatttgattgaatgcatgtgtaaaacttaaattattttatttatttccctaataaagagttaaataatttttttacttcatcgttatt |
3925106 |
T |
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| Q |
318 |
tataagac |
325 |
Q |
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|||||||| |
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| T |
3925105 |
tataagac |
3925098 |
T |
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