View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2258_low_18 (Length: 321)

Name: NF2258_low_18
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2258_low_18
NF2258_low_18
[»] scaffold0014 (1 HSPs)
scaffold0014 (16-280)||(73430-73694)
[»] chr1 (15 HSPs)
chr1 (139-282)||(39323394-39323536)
chr1 (167-272)||(894930-895034)
chr1 (167-280)||(7785048-7785160)
chr1 (142-280)||(32268001-32268138)
chr1 (139-281)||(31366868-31367008)
chr1 (160-280)||(12482372-12482490)
chr1 (139-242)||(41898834-41898936)
chr1 (130-280)||(51046609-51046758)
chr1 (193-280)||(30742518-30742605)
chr1 (139-241)||(14331867-14331969)
chr1 (171-232)||(32512108-32512169)
chr1 (133-241)||(44359640-44359748)
chr1 (139-210)||(11803334-11803405)
chr1 (141-198)||(21631209-21631266)
chr1 (142-194)||(39421080-39421132)
[»] chr2 (13 HSPs)
chr2 (142-280)||(2958449-2958586)
chr2 (158-280)||(10740392-10740513)
chr2 (211-280)||(43106785-43106854)
chr2 (177-248)||(31167617-31167688)
chr2 (141-279)||(2209895-2210032)
chr2 (159-280)||(9991437-9991557)
chr2 (142-242)||(2239611-2239711)
chr2 (165-241)||(30831648-30831724)
chr2 (139-241)||(10824259-10824359)
chr2 (221-280)||(21362410-21362468)
chr2 (158-241)||(39085788-39085871)
chr2 (142-280)||(6975813-6975949)
chr2 (139-235)||(2805419-2805515)
[»] chr6 (5 HSPs)
chr6 (166-281)||(28541947-28542061)
chr6 (139-280)||(1947397-1947537)
chr6 (141-280)||(16441768-16441906)
chr6 (139-274)||(22616866-22616998)
chr6 (161-243)||(6614878-6614960)
[»] chr7 (18 HSPs)
chr7 (166-280)||(34111836-34111949)
chr7 (142-280)||(33901241-33901378)
chr7 (140-280)||(33474331-33474470)
chr7 (167-282)||(32854076-32854190)
chr7 (139-243)||(36856573-36856677)
chr7 (211-279)||(47663231-47663298)
chr7 (139-280)||(48705623-48705763)
chr7 (158-280)||(3408183-3408304)
chr7 (140-237)||(1907567-1907664)
chr7 (175-275)||(675121-675220)
chr7 (212-280)||(5082486-5082553)
chr7 (139-275)||(38903614-38903749)
chr7 (223-280)||(21577704-21577759)
chr7 (185-242)||(32204211-32204268)
chr7 (144-272)||(5787259-5787386)
chr7 (190-242)||(35239815-35239867)
chr7 (139-280)||(35729406-35729548)
chr7 (142-242)||(40774222-40774322)
[»] chr3 (21 HSPs)
chr3 (139-280)||(9189214-9189354)
chr3 (170-280)||(32070641-32070748)
chr3 (145-280)||(6822784-6822919)
chr3 (148-280)||(15502622-15502753)
chr3 (139-263)||(21195256-21195379)
chr3 (142-234)||(32385585-32385677)
chr3 (139-281)||(23528026-23528165)
chr3 (140-280)||(15005798-15005937)
chr3 (186-280)||(33641244-33641337)
chr3 (139-280)||(41998874-41999014)
chr3 (143-280)||(36051949-36052085)
chr3 (139-241)||(45899520-45899623)
chr3 (142-242)||(34060745-34060846)
chr3 (139-195)||(35502022-35502078)
chr3 (160-242)||(1165785-1165867)
chr3 (166-280)||(46055777-46055890)
chr3 (222-280)||(31378529-31378586)
chr3 (149-242)||(39974792-39974886)
chr3 (139-253)||(46365255-46365368)
chr3 (215-280)||(29454851-29454916)
chr3 (159-280)||(38611350-38611470)
[»] chr4 (20 HSPs)
chr4 (142-280)||(55465442-55465578)
chr4 (166-271)||(56268918-56269022)
chr4 (166-280)||(35498822-35498935)
chr4 (142-280)||(31463273-31463410)
chr4 (167-281)||(45257608-45257721)
chr4 (139-280)||(3180515-3180655)
chr4 (139-216)||(51581433-51581510)
chr4 (139-241)||(13498094-13498196)
chr4 (139-241)||(31010404-31010506)
chr4 (140-242)||(35675168-35675270)
chr4 (185-242)||(32584542-32584599)
chr4 (149-241)||(4867756-4867848)
chr4 (167-275)||(27628862-27628969)
chr4 (185-241)||(52341631-52341687)
chr4 (141-242)||(30617978-30618079)
chr4 (185-242)||(35511203-35511260)
chr4 (167-280)||(48604206-48604316)
chr4 (159-280)||(16559991-16560113)
chr4 (160-280)||(19934463-19934582)
chr4 (167-239)||(20435795-20435867)
[»] chr8 (11 HSPs)
chr8 (166-275)||(40058195-40058304)
chr8 (139-251)||(6237489-6237600)
chr8 (142-242)||(36054962-36055062)
chr8 (139-242)||(7532814-7532917)
chr8 (145-280)||(24066943-24067077)
chr8 (142-241)||(31596401-31596500)
chr8 (178-232)||(24286535-24286589)
chr8 (166-232)||(40451949-40452015)
chr8 (163-241)||(43819568-43819646)
chr8 (218-270)||(11799012-11799063)
chr8 (185-241)||(19389333-19389389)
[»] chr5 (7 HSPs)
chr5 (141-280)||(32522679-32522816)
chr5 (160-280)||(28782676-28782795)
chr5 (142-273)||(10317221-10317351)
chr5 (142-241)||(4293811-4293910)
chr5 (185-248)||(11594700-11594763)
chr5 (139-216)||(19804490-19804567)
chr5 (185-241)||(25017314-25017370)
[»] scaffold0169 (1 HSPs)
scaffold0169 (142-273)||(8988-9118)
[»] scaffold0050 (1 HSPs)
scaffold0050 (134-198)||(37361-37425)
[»] scaffold0045 (2 HSPs)
scaffold0045 (213-280)||(62629-62694)
scaffold0045 (213-280)||(69961-70026)


Alignment Details
Target: scaffold0014 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 73694 - 73430
Alignment:
Q  16 atccaatctaagagttaagtctgaataatatatttgtaatacaaatcaaacaattattatacaaatgaaatgaagtaagctaagtgacttatagcttgtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  73694 atccaatctaagagttaagtctgaataatatatttgtaatacaaatcaaacaattattatacaaatgaaatgatgtaagctaactgacttatagcttgtc 73595  T
Q  116 catatactcatctttataaataggggaaatgctaaagagtgttcttgggacattggtt-aaaagaacaataatagaaatattgtgttggaaagttataaa 214  Q
    |||||| |||||||||||| || ||||||||||||||||||| | | ||||||| ||| |||||||||||||| |||||||||||||||||||| |||||    
T  73594 catatagtcatctttataagta-gggaaatgctaaagagtgtccataggacattagttaaaaagaacaataattgaaatattgtgttggaaagtgataaa 73496  T
Q  215 aagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  73495 aagttatgaattcaactttttaaaagtttgaaaaattataattttcaatgtaaaactactattttt 73430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 139 - 282
Target Start/End: Complemental strand, 39323536 - 39323394
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  39323536 gggaaatgctaaagagtgttcttagtacattggttaagtgaacaataatagaaatattgtgttggaaagtggtaaaaagtgatgaattcaacattttaaa 39323437  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactatttttta 282  Q
    |||||| ||||||||| |||  ||| ||||||||||||||||||    
T  39323436 agtttg-aaaattgtagtttctaatataaaactactatttttta 39323394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 895034 - 894930
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    ||||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  895034 attggttaagagaacagtaatagaaatattatgttggaaagttgtgaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagtttccaatgta 894936  T
Q  267 aaacta 272  Q
    ||||||    
T  894935 aaacta 894930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 7785160 - 7785048
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    ||||||||| |||||||||||| |||||||||||| ||||    | ||||||||||||||||| |||| | ||||||| ||||||||| ||||||||| |    
T  7785160 attggttaagagaacaataataaaaatattgtgttagaaaccggtgaaaagtgatgaattcaatttttcataagtttg-aaaattgtagttttcaatgca 7785062  T
Q  267 aaactactattttt 280  Q
    ||||||||||||||    
T  7785061 aaactactattttt 7785048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 32268138 - 32268001
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||||||| ||||| ||||| |||||||||||  |||| ||||| | ||||| ||| |  | ||||||| ||||||||||||| ||||||     
T  32268138 aaatgctaaagagtgtttttggggcattgattaaaagaacataaataaaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaaag- 32268040  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |  |||||||||||||| ||| |||||||||||| ||||    
T  32268039 tcaaaaaattgtaatttccaacgtaaaactactactttt 32268001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 31366868 - 31367008
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| |||||||||  |||| || |||| |||| ||||||| |||||||||||  |||| |||||| || ||||||| ||||||||| ||||||||    
T  31366868 gggaaatgttaaagagtgcccttgtgatattgattaagagaacaaaaatagaaatatcatgttagaaagtgatgaaaagtggtgaattcaattttttaaa 31366967  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactatttttt 281  Q
    ||||  |||| || | |||| |||||||||  |||||||||||    
T  31366968 agtt--aaaattttttatttccaatgtaaagttactatttttt 31367008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 12482372 - 12482490
Alignment:
Q  160 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 259  Q
    |||||| ||||| |||| |||||| |||| |||| |||||||||||| | |||||||||||| || ||||||| | ||||||||  ||||||||  ||||    
T  12482372 ttgggatattggataaaggaacaaaaataaaaattttgtgttggaaaatgataaaaagtgatcaaatcaacttgtaaaaagttt--aaaattgttgtttt 12482469  T
Q  260 caatgtaaaactactattttt 280  Q
     ||||||||||||||| ||||    
T  12482470 taatgtaaaactactaatttt 12482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 242
Target Start/End: Original strand, 41898834 - 41898936
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| |||||||||||||| |||| |||||||| | || |  |||||||||||||| ||| ||| |  |||||||||||||||| |||||||||||    
T  41898834 gggaaatgttaaagagtgttcttaggacgttggttaaga-aatacaaatagaaatattgtattgaaaaatggtaaaaagtgatgaatttaactttttaaa 41898932  T
Q  239 agtt 242  Q
    ||||    
T  41898933 agtt 41898936  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 280
Target Start/End: Original strand, 51046609 - 51046758
Alignment:
Q  130 tataaataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaa 229  Q
    |||| ||| ||||||||||||| | ||  ||| ||||||||||||| ||||||  |||||||||| | ||||| ||| |  | ||||||| |||||||||    
T  51046609 tatatatatgggaaatgctaaacaatgcccttaggacattggttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaa 51046708  T
Q  230 ctttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||| |  |||| |||| |||| ||||| |||||||||| ||||    
T  51046709 ctttttaaaag-tcaaaaagttgtcatttccaatgcaaaactactactttt 51046758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 30742518 - 30742605
Alignment:
Q  193 tattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||||||||  |||||||| ||||||||||| ||||||||||||| |||||||||| |||| |||  ||||||| |||||||    
T  30742518 tattgtgttggaaagtggtaaaaagtaatgaattcaacttttttaaaagttt-aaaaattgtagtttttaatacaaaactattattttt 30742605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 14331969 - 14331867
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||  |||||| ||||||||||||  | || |||||||| ||||| |||| || |  | |||| ||| ||||| |||||||||||    
T  14331969 gggaaatgctaaagagtgcccttggggcattggttaaaatgataaaaatagaaacattgtattgggaaatggtgaaaaatgaagaatttaactttttaaa 14331870  T
Q  239 agt 241  Q
    |||    
T  14331869 agt 14331867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 32512169 - 32512108
Alignment:
Q  171 gttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 232  Q
    |||||| |||||| ||||||||| |||||||||||| | |||||||||||| || |||||||    
T  32512169 gttaaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtgatcaagtcaactt 32512108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 241
Target Start/End: Original strand, 44359640 - 44359748
Alignment:
Q  133 aaataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 232  Q
    ||||| ||||||||||||||||||  |||||| |||||||||| |  | || |||||||| ||||| | || || |  | |||||||| ||||| |||||    
T  44359640 aaataagggaaatgctaaagagtgcccttgggccattggttaagatgataaaaatagaaacattgtatcgggaaatggtgaaaagtgaagaatttaactt 44359739  T
Q  233 tttaaaagt 241  Q
    |||||||||    
T  44359740 tttaaaagt 44359748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 11803334 - 11803405
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagtta 210  Q
    ||||||||||||| |||  | ||||| ||||||||||| |||||| |||||||||||  |||||| ||||||    
T  11803334 gggaaatgctaaatagtactattggggcattggttaaatgaacaaaaatagaaatatcttgttgggaagtta 11803405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 21631209 - 21631266
Alignment:
Q  141 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgt 198  Q
    |||||||||||||||||  |||||||||||||||| |  | || ||||||||||||||    
T  21631209 gaaatgctaaagagtgtctttgggacattggttaagatgataaaaatagaaatattgt 21631266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 39421132 - 39421080
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaata 194  Q
    ||||| |||| ||||| ||||||||||||||||| ||||||  ||||||||||    
T  39421132 aaatgttaaacagtgtccttgggacattggttaagagaacataaatagaaata 39421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 2958449 - 2958586
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||||  |||||||||||||||||||  | |||||| ||||||| ||||||||||||||    
T  2958449 aaatgctaaatagtgtccttgggacattgtttaaaagaacaataatgaaaatattgtgttggaaagtggtgaaaagttatgaatttaactttttaaaagt 2958548  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||| ||||||||| |||||||||||||||||||||||||    
T  2958549 ttg-aaaattgtatttttcaatgtaaaactactattttt 2958586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 10740392 - 10740513
Alignment:
Q  158 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatt 257  Q
    |||| |||||||||||||| || |||||||| |||||||||||  | ||||  ||||||||||||||||||| ||||||||||||| ||||||||||||     
T  10740392 tcttaggacattggttaaaggagcaataatataaatattgtgtgaggaagtggtaaaaagtgatgaattcaattttttaaaagttt-aaaaattgtaatc 10740490  T
Q  258 ttcaatgtaaaactactattttt 280  Q
    |||||||||||||||||||||||    
T  10740491 ttcaatgtaaaactactattttt 10740513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 43106785 - 43106854
Alignment:
Q  211 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  43106785 taaaaagtgatcaatttaactttttaaaagtttgaaaaattgtagttatcaatgtaaaactactattttt 43106854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 31167688 - 31167617
Alignment:
Q  177 agaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 248  Q
    |||||||||||| |||||||||||| |||| | || |||| ||||||||| |||||||||||||||||||||    
T  31167688 agaacaataataaaaatattgtgttagaaaatgatgaaaattgatgaatttaactttttaaaagtttgaaaa 31167617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 2209895 - 2210032
Alignment:
Q  141 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 240  Q
    |||||| ||||||||| |||||||||||||||||| ||||  | |||| ||| | ||| ||||||| |  |||||||| ||||||||||||||| |||||    
T  2209895 gaaatgttaaagagtgctcttgggacattggttaagagaattaaaataaaaaaaatgtattggaaaatggtaaaaagttatgaattcaacttttgaaaag 2209994  T
Q  241 tttgaaaaattgtaattttcaatgtaaaactactatttt 279  Q
     |  ||||||||| | ||||||||| ||  |||||||||    
T  2209995 -tcaaaaaattgttaatttcaatgttaacttactatttt 2210032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 9991437 - 9991557
Alignment:
Q  159 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattt 258  Q
    |||||| |||||| ||||  ||||| ||||||||| |||| ||||||| | |||||||||  | || ||||||| | |||| ||| | |||||||  |||    
T  9991437 cttggggcattggataaagaaacaaaaatagaaattttgtattggaaaatgataaaaagtagtcaaatcaacttgtaaaaaattt-ataaattgttgttt 9991535  T
Q  259 tcaatgtaaaactactattttt 280  Q
    ||||||||||||||||| ||||    
T  9991536 tcaatgtaaaactactaatttt 9991557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 2239711 - 2239611
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||||| || |||| ||||||||||||| || | ||  ||||||||||||   || ||| |  |||||| ||||||||| ||||||||||||||    
T  2239711 aaatgctaaagaatgctcttaggacattggttaagaggataaagatagaaatattgcaatgaaaaatggtaaaaaatgatgaatttaactttttaaaagt 2239612  T
Q  242 t 242  Q
    |    
T  2239611 t 2239611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 30831724 - 30831648
Alignment:
Q  165 acattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||| | || || |||||||||||||  ||  ||| ||||||||| ||||||||| ||||||||||||||    
T  30831724 acattggttaacaaaataaaaatagaaatattgcattaaaaaattataaaaaatgatgaatttaactttttaaaagt 30831648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 241
Target Start/End: Complemental strand, 10824359 - 10824259
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| |||||||||  ||| ||||||||||||| ||||||  |||| ||||| | |||||||||||  | |||| || |||||| |||||| ||||    
T  10824359 gggaaatgttaaagagtg--cttaggacattggttaagagaacataaataaaaataatttgttggaaagtggtgaaaaatgttgaatttaactttctaaa 10824262  T
Q  239 agt 241  Q
    |||    
T  10824261 agt 10824259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 21362468 - 21362410
Alignment:
Q  221 tgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||||| |||||||||| ||| |||| |||| ||||||||| |||||||||||    
T  21362468 tgaattcaactttataaaagtttg-aaagttgttatttccaatgtaaatctactattttt 21362410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 39085788 - 39085871
Alignment:
Q  158 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||||||| |||| | | || |||||||||||    ||||||| | |||||||||||| |||| ||||||||||||||    
T  39085788 tcttgggacattggataaagggataaaaatagaaatataacattggaaaatgataaaaagtgataaatttaactttttaaaagt 39085871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 6975813 - 6975949
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||||| | |  | ||||||| ||| ||||||| |||| ||||| | ||||| |||||  | |||| || ||||||||||| | || ||||    
T  6975813 aaatgctaaagagtgctttcagaacattggctaagagaacaaaaataaaaataatatgttg-aaagtggtgaaaaatgttgaattcaactctctagaagt 6975911  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    || |||| |||||| ||| ||||||||||||||| ||||    
T  6975912 tt-aaaagttgtaagtttaaatgtaaaactactactttt 6975949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 2805515 - 2805419
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaacttttt 235  Q
    |||||||| |||||||||| ||   |||||||||||| || | || |||| || |||||| ||| ||| | || |||||||||||||| ||||||||    
T  2805515 gggaaatgttaaagagtgtcctgaagacattggttaagaggataaaaatataagtattgtattgaaaaataattaaaagtgatgaatttaacttttt 2805419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 28542061 - 28541947
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 265  Q
    |||||||||| |||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28542061 cattggttaagagaacaataataaaaatattgtgttggaaagtagtaaaaagtgatgaattcaactttttaaaagtttg-aaaattgtagttttcaatgt 28541963  T
Q  266 aaaactactatttttt 281  Q
    |||| |||||||||||    
T  28541962 aaaattactatttttt 28541947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 1947537 - 1947397
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||||||||||||||||||| | |||||||||| ||||||  |||||||||| | ||||||||| |  ||||||||| | ||||||||||| ||||    
T  1947537 gggaaatgctaaagagtgttcttgaggcattggttaagagaacataaatagaaataatttgttggaaaatggtaaaaagtgttaaattcaactttctaaa 1947438  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    || |  |||| ||||||||| ||||  |||||||||| ||||    
T  1947437 ag-tcaaaaagttgtaatttccaatacaaaactactactttt 1947397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 16441768 - 16441906
Alignment:
Q  141 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 240  Q
    ||||||||||||||||||||| |||||||||||||||||| |  |||| ||||| | ||||| |||||  | |||| || ||||||||| ||| ||||||    
T  16441768 gaaatgctaaagagtgttctttggacattggttaaaagaatataaatataaataatttgttgaaaagtggtgaaaaatgttgaattcaaatttctaaaag 16441867  T
Q  241 tttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
     |  |||| |||||||||  |||| |||| ||||||||||    
T  16441868 -taaaaaagttgtaatttctaatgcaaaattactattttt 16441906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 274
Target Start/End: Complemental strand, 22616998 - 22616866
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||  | ||| |||||| |||||| ||||| ||||| |||||||  ||||||||||||| | |||||||||  | || ||||||| | |||    
T  22616998 gggaaatgctaatcattgtccttggggcattggataaaataacaaaaatagaa--attgtgttggaaaatgataaaaagtagtcaaatcaacttataaaa 22616901  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactact 274  Q
    ||||| | |||||||  ||| |||||||||||||||    
T  22616900 agttt-ataaattgttgtttccaatgtaaaactact 22616866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 6614878 - 6614960
Alignment:
Q  161 tgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 243  Q
    |||| |||||| |||| |||||| ||||||||| |||||||||||| | |||||||||| | || ||||||| | ||||||||    
T  6614878 tggggcattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtggtcaaatcaacttgtaaaaagttt 6614960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 34111836 - 34111949
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 265  Q
    |||||||||| ||||||||||||||||||||||||||| ||||  |||||| ||| | |||||||||||||||||||| ||||||||||||||||||||     
T  34111836 cattggttaagagaacaataatagaaatattgtgttgggaagtggtaaaaaatgaaggattcaactttttaaaagttt-aaaaattgtaattttcaatgc 34111934  T
Q  266 aaaactactattttt 280  Q
    |||||||||||||||    
T  34111935 aaaactactattttt 34111949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 142 - 280
Target Start/End: Complemental strand, 33901378 - 33901241
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||||||  || ||||||||||||| |||||||||||||||||||| | |||||||||  ||||| |||||||| ||||||||| ||||||    
T  33901378 aaatgctaaagagtgtctttaggacattggttaatagaacaataatagaaatattatcttggaaagtggtaaaatgtgatgaactcaacttttaaaaagt 33901279  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||| ||||||||| ||| |||| ||||| || |||||||    
T  33901278 ttg-aaaattgtagtttccaatttaaaattattattttt 33901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 33474470 - 33474331
Alignment:
Q  140 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 239  Q
    |||||||||||| |||||| ||||| |||||||||| ||||||| |||||||||| | ||||| ||| |||| ||||||| ||||||||||||| |||||    
T  33474470 ggaaatgctaaatagtgtttttggggcattggttaagagaacaaaaatagaaataatttgttgaaaaattatgaaaagtgttgaattcaactttctaaaa 33474371  T
Q  240 gtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    | |  |||| ||||||||||||||| |||| ||||||||||    
T  33474370 g-tcaaaaagttgtaattttcaatgcaaaattactattttt 33474331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 282
Target Start/End: Complemental strand, 32854190 - 32854076
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    ||||||||| |||||||||||| ||||||| ||||||||| |  ||||| ||||||||||||||||||||||||||| ||||||| || ||| ||| ||     
T  32854190 attggttaagagaacaataataaaaatattatgttggaaaatagtaaaatgtgatgaattcaactttttaaaagttt-aaaaattatagtttccaacgtc 32854092  T
Q  267 aaactactatttttta 282  Q
    |||||||| |||||||    
T  32854091 aaactactctttttta 32854076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 243
Target Start/End: Complemental strand, 36856677 - 36856573
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||| ||| || |||||| |||| |||||| |||||||||  ||| || |||||| |||||||||||| || ||||||| | |||    
T  36856677 gggaaatgctaaagagtgtccttagggcattggataaaggaacaaaaatagaaattgtgtattagaaagtgataaaaagtgatcaagtcaacttgtaaaa 36856578  T
Q  239 agttt 243  Q
    |||||    
T  36856577 agttt 36856573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 47663298 - 47663231
Alignment:
Q  211 taaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactatttt 279  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  47663298 taaaaagtgatgaattaaactatttaaaagttt-aaaaattgtaattttcaatacaaaactactatttt 47663231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 48705763 - 48705623
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||| ||||||| |||||  |||||| ||||| |||| ||||||  |||||||||| | ||||| ||| |  | ||||||| ||||||||||||| ||||    
T  48705763 gggagatgctaaggagtggccttggggcattgtttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttctaaa 48705664  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    || || |||| |||||||||  |||| |||||||||| ||||    
T  48705663 ag-ttaaaaagttgtaatttctaatgcaaaactactactttt 48705623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 3408304 - 3408183
Alignment:
Q  158 tcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatt 257  Q
    |||||||||||||  ||||||||||| ||||||||| |||||||| ||| | |||||||||  | || ||||||| | ||||| || | |||||||  ||    
T  3408304 tcttgggacattgaataaaagaacaaaaatagaaattttgtgttgaaaaatgataaaaagtagtcaagtcaacttgtaaaaag-ttaataaattgttgtt 3408206  T
Q  258 ttcaatgtaaaactactattttt 280  Q
    | ||||||||| |||||| ||||    
T  3408205 tccaatgtaaagctactaatttt 3408183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 1907567 - 1907664
Alignment:
Q  140 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaa 237  Q
    ||||||||||||||||| ||||| |||||||| |||||| | || || ||||||||||| ||| ||| |  |||||| | ||||||| || |||||||    
T  1907567 ggaaatgctaaagagtgctcttgagacattggataaaaggataaaaagagaaatattgtattgaaaaatggtaaaaaataatgaatttaattttttaa 1907664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 275
Target Start/End: Original strand, 675121 - 675220
Alignment:
Q  175 aaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactact 274  Q
    |||||| || ||||||||| |||||||||||| | |||||||||| | || ||||||  | |||||||| | |||||||  ||||||||||||| |||||    
T  675121 aaagaaaaaaaatagaaattttgtgttggaaaataataaaaagtggtcaaatcaactagtaaaaagttt-ataaattgttgttttcaatgtaaagctact 675219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 5082553 - 5082486
Alignment:
Q  212 aaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||||||| |||||||||||||||||||| |  |||| ||||||||| ||||| |||||||||| ||||    
T  5082553 aaaaagtgttgaattcaactttttaaaag-tcaaaaagttgtaatttccaatgcaaaactactactttt 5082486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 275
Target Start/End: Complemental strand, 38903749 - 38903614
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| || |||| | |||||||  ||| ||||||||||||| |||| ||||||||||||  |||||  | |||| |||  ||||  ||||||||||    
T  38903749 gggaaatgatagagagggctcttgggggattagttaaaagaacaacaataaaaatattgtgttaaaaagtggttaaaaatgacaaattatactttttaaa 38903650  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactacta 275  Q
    ||||| |||||||||| |||  |||| |||| |||||    
T  38903649 agttt-aaaaattgtagtttcaaatgaaaaattacta 38903614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 21577704 - 21577759
Alignment:
Q  223 aattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||| ||||||||||||||||  ||||||||| ||| ||||||||||||| |||||||    
T  21577704 aatttaactttttaaaagttt--aaaattgtagtttccaatgtaaaactagtattttt 21577759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 32204268 - 32204211
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    |||||||||||||  ||| ||| | || |||||||||||||| |||||||||||||||    
T  32204268 aatagaaatattgcattgaaaaatgatgaaaagtgatgaatttaactttttaaaagtt 32204211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 5787386 - 5787259
Alignment:
Q  144 atgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagttt 243  Q
    |||||||||||||  |||| || ||||| || | |||||| |||| |||  || ||||||||||| |||||||||| | || ||| ||| | ||||||||    
T  5787386 atgctaaagagtgcccttgtgatattggatagaggaacaaaaataaaaaatttatgttggaaagtgataaaaagtggtcaagtcatcttataaaaagttt 5787287  T
Q  244 gaaaaattgtaattttcaatgtaaaacta 272  Q
     | ||||| |  |||||||||||||||||    
T  5787286 -acaaattattgttttcaatgtaaaacta 5787259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 35239815 - 35239867
Alignment:
Q  190 aaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    |||||| |||||| ||| | |||||| |||||||||| |||||||||||||||    
T  35239815 aaatatggtgttgaaaaatgataaaacgtgatgaatttaactttttaaaagtt 35239867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 35729406 - 35729548
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaa--agaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaacttttta 236  Q
    |||||||| |||||||||  ||||||||||||  ||||  | || || |||||||||  ||||||| ||||| |||||||||| | || ||||||| | |    
T  35729406 gggaaatgttaaagagtgcccttgggacattgaataaaggaaaaaaaaaatagaaattgtgtgttgaaaagtgataaaaagtggttaagtcaacttgtaa 35729505  T
Q  237 aaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||| ||| | ||||| |  ||| |||||||||||||||| ||||    
T  35729506 aaaattt-ataaattattgtttccaatgtaaaactactaatttt 35729548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 40774222 - 40774322
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||| ||||||||||  ||||||||||| |||| |  | |  |||||||||||||  ||| ||| | || |||| ||||||||| ||||||||||||||    
T  40774222 aaatgttaaagagtgtcattgggacattgattaagaagatacaaatagaaatattgcattgaaaaatgatgaaaattgatgaatttaactttttaaaagt 40774321  T
Q  242 t 242  Q
    |    
T  40774322 t 40774322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 9189354 - 9189214
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| |||||||||  ||| ||   ||||||||  ||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  9189354 gggaaatgttaaagagtgcccttagggtgttggttaagtgaacaataatagaaatattatgttggaaagtggtaaaaagtgatgaattcaactttttaaa 9189255  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
     || || ||||||||| ||||| |||||||||||||||||||    
T  9189254 tgtgtg-aaaattgtagttttctatgtaaaactactattttt 9189214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 32070748 - 32070641
Alignment:
Q  170 ggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaa 269  Q
    |||||||||||||||||||  |||||||||||| |||||  | |||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||    
T  32070748 ggttaaaagaacaataata--aatattgtgttgaaaagtggtgaaaagtgatgaattcaactttttaaaagtttg-aaaattataatttttaatataaaa 32070652  T
Q  270 ctactattttt 280  Q
    |||||||||||    
T  32070651 ctactattttt 32070641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 280
Target Start/End: Original strand, 6822784 - 6822919
Alignment:
Q  145 tgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttg 244  Q
    |||||| ||||| ||||  |||||||||||| |||||||||| |  ||||||||||||||||||  |||||||||||||||||||||||||||||||||     
T  6822784 tgctaatgagtgctcttatgacattggttaagagaacaataaaa--aatattgtgttggaaagtggtaaaaagtgatgaattcaactttttaaaagtttt 6822881  T
Q  245 aaaa--attgtaattttcaatgtaaaactactattttt 280  Q
    ||||   | ||| |||||||||||||| || |||||||    
T  6822882 aaaattgtagtagttttcaatgtaaaattattattttt 6822919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 148 - 280
Target Start/End: Original strand, 15502622 - 15502753
Alignment:
Q  148 taaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaa 247  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||| | ||||| ||| |  |||||| || |||||||||||||||||||| || |||    
T  15502622 taaagagtgtccttgagacattggttaagagaacaaaaatagaaataatttgttgaaaaatggtaaaaaatgttgaattcaactttttaaaag-ttaaaa 15502720  T
Q  248 aattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||| ||||  |||||| ||||||||    
T  15502721 aattgtaatttccaatacaaaactgctattttt 15502753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 21195256 - 21195379
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||| ||  | |||| ||||||||||||| |||||| |||||||||||  ||||||||||| || ||||||| ||||||||||||||||||    
T  21195256 gggaaatgctaaatagaatccttgagacattggttaaaggaacaaaaatagaaatatcttgttggaaagtgatgaaaagtggtgaattcaactttttaaa 21195355  T
Q  239 agtttgaaaaattgtaattttcaat 263  Q
    || || ||||||||| |||| ||||    
T  21195356 ag-ttaaaaaattgttatttccaat 21195379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 32385585 - 32385677
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttt 234  Q
    ||||||||||||||||  ||  | |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  32385585 aaatgctaaagagtgtctttaaggcattggttaagagaacaataatagtaatattgtgttggaaagtaataaaaagtgatgaattcaagtttt 32385677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 23528026 - 23528165
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||||||||||||   ||| ||||||||||||| ||||||  ||||| | ||||||||||||||||  | |||| |||||||||||||||||||||    
T  23528026 gggaaatgctaaagagtac-ctttggacattggttaagagaacacaaataggactattgtgttggaaagtggtgaaaa-tgatgaattcaactttttaaa 23528123  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactatttttt 281  Q
    |||||| ||||||||| ||| |||| || || || ||||||||    
T  23528124 agtttg-aaaattgtagtttccaatatagaaatattatttttt 23528165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 280
Target Start/End: Complemental strand, 15005937 - 15005798
Alignment:
Q  140 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 239  Q
    ||||||| |||| |||||  |||||||||||||||| ||||||  || ||||||| | | | | ||| |  ||||||||| ||||||||||||| |||||    
T  15005937 ggaaatgttaaatagtgtctttgggacattggttaagagaacataaacagaaataatttatggaaaaatggtaaaaagtgttgaattcaactttgtaaaa 15005838  T
Q  240 gtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||  |||||||||||||||||||| |||||||||| ||||    
T  15005837 gtta-aaaaattgtaattttcaatgcaaaactactactttt 15005798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 33641337 - 33641244
Alignment:
Q  186 atagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||||||| ||||||||| |  | |||| |||| |||||||||||||||||||||  ||||||||| ||||||| |||||||||||||||||    
T  33641337 atagaaatattatgttggaaattggtgaaaaatgataaattcaactttttaaaagttt-taaaattgtagttttcaacgtaaaactactattttt 33641244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 41999014 - 41998874
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    |||||||| |||||||||  ||||||||||||||||| ||||||  |||||||||| | ||||| ||| |  | ||||||| | ||||||||||| ||||    
T  41999014 gggaaatgttaaagagtgcccttgggacattggttaagagaacataaatagaaataatttgttgaaaaatggtgaaaagtgttaaattcaactttataaa 41998915  T
Q  239 agtttgaaaaa--ttgtaattttcaatgtaaaactactattttt 280  Q
    |||   |||||  ||||||||||||| | |||||||||| ||||    
T  41998914 agt---aaaaatgttgtaattttcaaagcaaaactactactttt 41998874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 280
Target Start/End: Original strand, 36051949 - 36052085
Alignment:
Q  143 aatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    ||||||||||||||  ||  || |||||||||| | | ||| |||||||||||| |||||| || | || |||||||  |||||  |||||||||||| |    
T  36051949 aatgctaaagagtgccctcagggcattggttaagaaagcaaaaatagaaatattatgttgggaaatgatgaaaagtggagaatttcactttttaaaag-t 36052047  T
Q  243 tgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    | || |||||| |||||||||| |||||||||||||||    
T  36052048 taaacaattgttattttcaatgcaaaactactattttt 36052085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 45899520 - 45899623
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttat-aaaaagtgatgaattcaactttttaa 237  Q
    |||||| | ||||||||| ||||||| |||||| ||| |||| || |||||||||||| | ||||||| | || ||||||||||||||| || |||||||    
T  45899520 gggaaacgttaaagagtgctcttggggcattggataagagaataaaaatagaaatattatattggaaaatgatgaaaaagtgatgaatttaaatttttaa 45899619  T
Q  238 aagt 241  Q
    ||||    
T  45899620 aagt 45899623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 34060745 - 34060846
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaa-aagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 240  Q
    |||||||||||||||| |||||  |||||||||| ||||  || |||| ||||||||| ||| ||| |  | |||||||||||||| |||||||||||||    
T  34060745 aaatgctaaagagtgtccttggtgcattggttaagaagataaaaaataaaaatattgtattgaaaaatggtgaaaagtgatgaatttaactttttaaaag 34060844  T
Q  241 tt 242  Q
    ||    
T  34060845 tt 34060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 35502078 - 35502022
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatat 195  Q
    |||||||| ||||||||||||||||||||||||| || ||||| | |||||||||||    
T  35502078 gggaaatgataaagagtgttcttgggacattggtcaagagaacgaaaatagaaatat 35502022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 1165867 - 1165785
Alignment:
Q  160 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    |||||||||||||||  ||||||  |||||||||| | ||||| ||||| || |||| || ||||||||||||| ||||||||    
T  1165867 ttgggacattggttatgagaacataaatagaaataatttgttgaaaagtgatgaaaaatgttgaattcaactttctaaaagtt 1165785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 46055777 - 46055890
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 265  Q
    |||||| |||| |||||| ||||||||| |||||||||||| | |||||||||  | || ||||||| | ||||| || | |||||||  |||| |||||    
T  46055777 cattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaag-ttaataaattgttgtttttaatgt 46055875  T
Q  266 aaaactactattttt 280  Q
    |||||||||| ||||    
T  46055876 aaaactactaatttt 46055890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 31378529 - 31378586
Alignment:
Q  222 gaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||||||||||||||||||||| ||||||  |  |||||||||||||||||||| ||||    
T  31378529 gaattcaactttttaaaagttt-aaaaatcattgttttcaatgtaaaactactactttt 31378586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 39974792 - 39974886
Alignment:
Q  149 aaagagtgttcttgggacattggttaaaagaa-caataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    ||||||||| ||||| ||||||||| |||| | ||| |||| ||||||||  || |||| | || | |||||||||||| |||||||||||||||    
T  39974792 aaagagtgtccttggaacattggttgaaaggatcaaaaataaaaatattgcattagaaaatgatgagaagtgatgaatttaactttttaaaagtt 39974886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 253
Target Start/End: Complemental strand, 46365368 - 46365255
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||   || |  ||||| |||| ||||||| |||||||||||||| |||  || |  ||||| ||| |||||| |||||||||||    
T  46365368 gggaaatgctaaagagtgcctttagagcattgtttaagagaacaaaaatagaaatattgtattgagaaatggtaaaacgtggtgaattgaactttttaaa 46365269  T
Q  239 agtttgaaaaattgt 253  Q
    || || |||||||||    
T  46365268 agctt-aaaaattgt 46365255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 29454916 - 29454851
Alignment:
Q  215 aagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||| ||||||||||||| |||||  || ||||||||| |||||||||| || || |||||||||    
T  29454916 aagtggtgaattcaactttataaaaagtttaaaaattgttattttcaatgcaagacaactattttt 29454851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 38611470 - 38611350
Alignment:
Q  159 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattt 258  Q
    ||||||||||||| |||| ||| || ||||||||| |||||||||||| | ||| |||||  | || ||||||| | |||||||| | |||||||  |||    
T  38611470 cttgggacattggataaaggaagaaaaatagaaattttgtgttggaaaatgatagaaagttgtcaagtcaacttgtaaaaagttt-ataaattgttgttt 38611372  T
Q  259 tcaatgtaaaactactattttt 280  Q
     |||| |||| |||||| ||||    
T  38611371 ccaatataaagctactaatttt 38611350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 55465442 - 55465578
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||||  ||| ||| || |||||||||| ||| ||||||||||||||||||||||| ||||  |||||| ||||||||||||| ||||||||||    
T  55465442 aaatgctaaaggatgtccttagggcattggttaagagatcaataatagaaatattgtgttgggaagtggtaaaaaatgatgaattcaacattttaaaagt 55465541  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||  ||||||||| |||  ||| ||||||||||||||||    
T  55465542 tt--aaaattgtagtttctaatataaaactactattttt 55465578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 56269022 - 56268918
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 265  Q
    ||||||||||||||||||||||||||||||| | || ||||||  ||||||||||| ||||||||||||| |||||||| ||||||||| ||| ||||||    
T  56269022 cattggttaaaagaacaataatagaaatattatcttagaaagtggtaaaaagtgataaattcaacttttttaaagtttg-aaaattgtagtttccaatgt 56268924  T
Q  266 aaaact 271  Q
    ||||||    
T  56268923 aaaact 56268918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 166 - 280
Target Start/End: Original strand, 35498822 - 35498935
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgt 265  Q
    ||||| |||| |||||||||||| |||||||||||||| ||    |||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  35498822 cattgattaagagaacaataataaaaatattgtgttgggaataggtaaaaagtgatggattcaactttttaaatgttt-aaaaattgtagttttcaatgt 35498920  T
Q  266 aaaactactattttt 280  Q
    ||||||| |||||||    
T  35498921 aaaactattattttt 35498935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 280
Target Start/End: Original strand, 31463273 - 31463410
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||||||||  |||||| |||||| |||| |||||| ||||||||| ||||||||||||||  ||||||||| | || ||||||| | ||||||    
T  31463273 aaatgctaaagagtgcccttggggcattggataaaggaacaaaaatagaaattttgtgttggaaagtggtaaaaagtggtcaagtcaacttgtaaaaagt 31463372  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    || | |||||||  ||| ||| |||||||||||| ||||    
T  31463373 tt-acaaattgttgtttccaacgtaaaactactaatttt 31463410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 45257608 - 45257721
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    ||||||||| ||||||| |||||||||||| |||||| ||||  | ||||||| ||||||||||||||||||||  | ||||||| | |||| ||||| |    
T  45257608 attggttaagagaacaaaaatagaaatattttgttgggaagtgttgaaaagtggtgaattcaactttttaaaag-ctaaaaaattattatttccaatgca 45257706  T
Q  267 aaactactatttttt 281  Q
    || ||||||||||||    
T  45257707 aagctactatttttt 45257721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 280
Target Start/End: Complemental strand, 3180655 - 3180515
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||  ||| || ||||||||||  ||| || | |||||||||||||||| ||||   | ||||||| |||||||||||| | |||    
T  3180655 gggaaatgctaaagagtgcccttagggcattggttaatggaataaaattagaaatattgtgttgaaaaggggtgaaaagtggtgaattcaacttctgaaa 3180556  T
Q  239 agtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    | ||| ||||||||| |||| ||||| ||||| |||| ||||    
T  3180555 aattt-aaaaattgttatttccaatgcaaaacaactactttt 3180515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 51581433 - 51581510
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaa 216  Q
    ||||||||||||||||||  |||| | |||||| |||| |||||| ||||||||| |||||||||||||| |||||||    
T  51581433 gggaaatgctaaagagtgcccttgaggcattggataaaggaacaaaaatagaaattttgtgttggaaagtgataaaaa 51581510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 13498094 - 13498196
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||| ||||   |||||||||| |  | || |||||||||||||| ||||||| |  |||| |  |||||||| |||||||||||    
T  13498094 gggaaatgctaaagagtgtccttgatgcattggttaagatgataaaaatagaaatattgtattggaaaatagtaaagaacgatgaatttaactttttaaa 13498193  T
Q  239 agt 241  Q
    |||    
T  13498194 agt 13498196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 31010404 - 31010506
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||  |||||  |||||||||| |  | || |||||||| ||||| |||  || | ||||||||||| ||||| |||||||||||    
T  31010404 gggaaatgctaaagagtgcccttggagcattggttaagatgataaaaatagaaacattgtattgagaaatgataaaaagtgaagaatttaactttttaaa 31010503  T
Q  239 agt 241  Q
    |||    
T  31010504 agt 31010506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 35675168 - 35675270
Alignment:
Q  140 ggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 239  Q
    |||||| ||||||| ||  |||||| |||||||||| |  | || |||||||||||||| |||| || |  | |||||||||||||| ||||||||||||    
T  35675168 ggaaattctaaagactgcccttggggcattggttaagacgataaaaatagaaatattgtattgggaaatagtgaaaagtgatgaatttaactttttaaaa 35675267  T
Q  240 gtt 242  Q
    |||    
T  35675268 gtt 35675270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 32584542 - 32584599
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    |||| |||||||||||| |||| |  |||||||| |||||||||||||||||||||||    
T  32584542 aatataaatattgtgttagaaaatggtaaaaagtaatgaattcaactttttaaaagtt 32584599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 4867756 - 4867848
Alignment:
Q  149 aaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||| ||||| | |||||||||| ||||||  |||| ||||| | ||||| |||||  | ||||||| ||||||||| |||||||||||    
T  4867756 aaagagtgctcttgtggcattggttaagagaacataaataaaaataatttgttgaaaagtggtgaaaagtgttgaattcaaatttttaaaagt 4867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 275
Target Start/End: Complemental strand, 27628969 - 27628862
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    ||||| ||||||||||| |||| ||| ||| ||||||||| | || ||||||| | || ||||||| | |||||||| | |||||||  |||||||||||    
T  27628969 attggataaaagaacaaaaataaaaaaattttgttggaaaatgattaaaagtggtcaagtcaacttgtaaaaagttt-ataaattgttgttttcaatgta 27628871  T
Q  267 aaactacta 275  Q
    || ||||||    
T  27628870 aagctacta 27628862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 241
Target Start/End: Complemental strand, 52341687 - 52341631
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    |||||||||||| ||||||||| | || |||| ||||||||| ||||||||||||||    
T  52341687 aatagaaatattatgttggaaaatgatgaaaaatgatgaatttaactttttaaaagt 52341631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 30618079 - 30617978
Alignment:
Q  141 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 240  Q
    ||||||||||||||||  ||| || |||||||||| || | ||  ||||||||||||  |||| || | || |||||  ||||||| |||||||||||||    
T  30618079 gaaatgctaaagagtgcccttagggcattggttaagaggataaacatagaaatattgcattgggaaatgatgaaaagcaatgaatttaactttttaaaag 30617980  T
Q  241 tt 242  Q
    ||    
T  30617979 tt 30617978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 35511203 - 35511260
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtt 242  Q
    |||||||||||||| ||||||| |  | ||||||||||||||  ||||||||||||||    
T  35511203 aatagaaatattgtattggaaaatggtgaaaagtgatgaatttgactttttaaaagtt 35511260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 48604316 - 48604206
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgta 266  Q
    |||| |||| ||||||| |||||||||| | ||||| |||||  | |||| || ||||||||||  | ||||| ||| |||| ||||||||| |||||||    
T  48604316 attgattaagagaacaaaaatagaaataatatgttg-aaagtggtgaaaa-tgttgaattcaacactctaaaaattt-aaaagttgtaatttccaatgta 48604220  T
Q  267 aaactactattttt 280  Q
    ||||||||||||||    
T  48604219 aaactactattttt 48604206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 16559991 - 16560113
Alignment:
Q  159 cttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaag--tgatgaattcaactttttaaaagtttgaaaaattgtaat 256  Q
    |||||| |||||| |||| ||| || ||||||||| |||||||||||| | |||||||   || | || ||||||| | |||||||| | |||||||  |    
T  16559991 cttggggcattggataaaggaataaaaatagaaattttgtgttggaaaatgataaaaaaaatggtcaagtcaacttgtaaaaagttt-ataaattgttgt 16560089  T
Q  257 tttcaatgtaaaactactattttt 280  Q
    || |||||||||||||||| ||||    
T  16560090 ttccaatgtaaaactactaatttt 16560113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 19934463 - 19934582
Alignment:
Q  160 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 259  Q
    |||||| |||||  ||| |||||| |||| |||| |||| ||||||| | ||||||| || | || ||||||| | |||||||| | |||||||  ||||    
T  19934463 ttgggatattggagaaaggaacaaaaataaaaattttgtattggaaaatgataaaaaatggtcaagtcaacttgtaaaaagttt-ataaattgttgtttt 19934561  T
Q  260 caatgtaaaactactattttt 280  Q
     ||||||||||||||| ||||    
T  19934562 taatgtaaaactactaatttt 19934582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 239
Target Start/End: Original strand, 20435795 - 20435867
Alignment:
Q  167 attggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaa 239  Q
    |||||||||||  | || |||||||| ||||| ||||||| || | |||||||| ||||| ||||||||||||    
T  20435795 attggttaaaaagataaaaatagaaacattgtcttggaaaattgtgaaaagtgaagaatttaactttttaaaa 20435867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 166 - 275
Target Start/End: Original strand, 40058195 - 40058304
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaac-tttttaaaagtttgaaaaattgtaattttcaatg 264  Q
    |||||||||| |||||||||||| ||||||||| |||||||||  |||||||||||| || |||| ||||||||||||| |||||||||| ||||||||     
T  40058195 cattggttaagagaacaataataaaaatattgtcttggaaagtggtaaaaagtgatggatacaacttttttaaaagttt-aaaaattgtagttttcaata 40058293  T
Q  265 taaaactacta 275  Q
    |||||||||||    
T  40058294 taaaactacta 40058304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 6237600 - 6237489
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||| | ||  ||||||||||||||||||||||||| |||| ||||||  |||||| |||| || |||| || ||||||||||||||||||    
T  6237600 gggaaatgctaaataatgcccttgggacattggttaaaagaacaaaaataaaaatatcttgttgggaagtgatgaaaaatgctgaattcaactttttaaa 6237501  T
Q  239 agtttgaaaaatt 251  Q
    || ||||||||||    
T  6237500 ag-ttgaaaaatt 6237489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 242
Target Start/End: Original strand, 36054962 - 36055062
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||||||  ||||| |||||| |||| |||||| |||| |||| |||||||||||||| |||||||||| | || ||||||| | ||||||    
T  36054962 aaatgctaaagagtgtctttggggcattggataaaggaacaaaaataaaaattttgtgttggaaagtgataaaaagtggtcaaatcaacttgtaaaaagt 36055061  T
Q  242 t 242  Q
    |    
T  36055062 t 36055062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 139 - 242
Target Start/End: Complemental strand, 7532917 - 7532814
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaa 238  Q
    ||||||||||||||||||||||| || ||||||||||  | | || |||||||||||||| ||||||| |  | |||||||||||||| |  ||||||||    
T  7532917 gggaaatgctaaagagtgttcttagggcattggttaaggggataaaaatagaaatattgtattggaaaatggtgaaaagtgatgaatttaggtttttaaa 7532818  T
Q  239 agtt 242  Q
    ||||    
T  7532817 agtt 7532814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 280
Target Start/End: Complemental strand, 24067077 - 24066943
Alignment:
Q  145 tgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttg 244  Q
    ||||||||||||| |||||| |||| ||||| | ||||  |||| ||||| | |||||| || |  | ||||||| |||||||||| || |||||| ||     
T  24067077 tgctaaagagtgtccttggggcatttgttaagaaaacataaatataaataatttgttgggaaatggtgaaaagtgttgaattcaaccttctaaaag-tta 24066979  T
Q  245 aaaaattgtaattttcaatgtaaaactactattttt 280  Q
    |||| ||||||||||||||| |||||| ||| ||||    
T  24066978 aaaagttgtaattttcaatgcaaaactgctactttt 24066943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 31596401 - 31596500
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||||||  ||||||||||| |||| |  | || |||||||||||||||||  ||| |  | |||| |||||||||  |||||||||||||    
T  31596401 aaatgctaaagagtgtcattgggacattgattaagatgataaaaatagaaatattgtgttaaaaaatggtgaaaaatgatgaattttactttttaaaagt 31596500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 24286589 - 24286535
Alignment:
Q  178 gaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 232  Q
    |||||| ||||||||| |||||||||||||| |||||||||| | || |||||||    
T  24286589 gaacaaaaatagaaattttgtgttggaaagtgataaaaagtggtcaagtcaactt 24286535  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 40452015 - 40451949
Alignment:
Q  166 cattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactt 232  Q
    |||||| |||| |||||| ||| ||||| |||||||||||||| ||||||||| || || |||||||    
T  40452015 cattggataaaggaacaaaaatggaaattttgtgttggaaagtgataaaaagtaatcaaatcaactt 40451949  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 43819646 - 43819568
Alignment:
Q  163 ggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||||| ||||||  |||||||||| | ||||| ||| | || |||| || ||||||||||||| |||||||    
T  43819646 ggacattggttaagagaacatgaatagaaataatttgttgaaaaatgatgaaaaatgttgaattcaactttctaaaagt 43819568  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 11799012 - 11799063
Alignment:
Q  218 tgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaac 270  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||| |||||    
T  11799012 tgatgaattaaattttttaaaagtttg-aaaattgttattttcaatgcaaaac 11799063  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 19389333 - 19389389
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  19389333 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 19389389  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 280
Target Start/End: Original strand, 32522679 - 32522816
Alignment:
Q  141 gaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaag 240  Q
    ||||||||||| ||||  ||||| | |||||||||| |||||| |||||||||||| |||||| |||| ||||| | || |||||||||||||||||||     
T  32522679 gaaatgctaaatagtgcccttgg-atattggttaaaggaacaaaaatagaaatattttgttgggaagtgataaacattggtgaattcaactttttaaaa- 32522776  T
Q  241 tttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||| ||||||| | |||| ||||| |||||||||||||||    
T  32522777 tttaaaaaattattatttccaatgcaaaactactattttt 32522816  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 28782795 - 28782676
Alignment:
Q  160 ttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaaattgtaatttt 259  Q
    |||||| |||||||||||||| |  |||||||||| | ||||  ||| || ||||||||| |||||||||| ||||||||| |  |||| ||||||||||    
T  28782795 ttgggatattggttaaaagaatataaatagaaataatttgttaaaaaattgtaaaaagtgttgaattcaacattttaaaag-taaaaaagttgtaatttt 28782697  T
Q  260 caatgtaaaactactattttt 280  Q
    ||||  |||||||||| ||||    
T  28782696 caatacaaaactactactttt 28782676  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 273
Target Start/End: Complemental strand, 10317351 - 10317221
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||| ||||||||| ||||| ||||   ||||| ||||||| |||||||| | ||||||| ||| | || ||||||| |||||||||||||  | ||||    
T  10317351 aaatgttaaagagtgctcttgagacacatgttaagagaacaaaaatagaaagaatgtgttgaaaaatgatgaaaagtgttgaattcaactttcaagaagt 10317252  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactac 273  Q
    ||| ||| |||| |||||||||| ||||||||    
T  10317251 ttg-aaagttgtcattttcaatgcaaaactac 10317221  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 4293811 - 4293910
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||| |||||||||||||| || ||||||||||||| | || ||||| |||||||| |||  || | ||||| |||  |||||| ||||||||||||||    
T  4293811 aaatgttaaagagtgttcttagggcattggttaaaaggataaaaatagtaatattgtattgagaaatgataaagagtagtgaatttaactttttaaaagt 4293910  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 248
Target Start/End: Original strand, 11594700 - 11594763
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagtttgaaaa 248  Q
    |||||||||||||||||||||| |  | ||||||  |||||||||||||||| |||||| ||||    
T  11594700 aatagaaatattgtgttggaaaatggtgaaaagttgtgaattcaactttttataagtttaaaaa 11594763  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 216
Target Start/End: Original strand, 19804490 - 19804567
Alignment:
Q  139 gggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaa 216  Q
    ||||||||||||| ||||  |||| | |||||  |||| |||||| ||||||||| |||||||| ||||| |||||||    
T  19804490 gggaaatgctaaatagtgcccttgtggcattgaataaaggaacaaaaatagaaattttgtgttgaaaagtgataaaaa 19804567  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 25017314 - 25017370
Alignment:
Q  185 aatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||||||||| || ||||||| || | ||||||||| |||| ||||||||||||||    
T  25017314 aatagaaatatagtattggaaaattgtgaaaagtgataaatttaactttttaaaagt 25017370  T

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Target: scaffold0169 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 8988 - 9118
Alignment:
Q  142 aaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgtgttggaaagttataaaaagtgatgaattcaactttttaaaagt 241  Q
    ||||| |||| |||| |||||||||||||||||||| ||||  |||||||||| | ||||| ||| |  | ||||||| ||||||||||||||||||||     
T  8988 aaatgttaaatagtgctcttgggacattggttaaaataacataaatagaaataatttgttgaaaaatggtgaaaagtgttgaattcaactttttaaaag- 9086  T
Q  242 ttgaaaaattgtaattttcaatgtaaaactac 273  Q
    |  ||||||||||| |||||||| ||||||||    
T  9087 tcaaaaaattgtaactttcaatgcaaaactac 9118  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 37361 - 37425
Alignment:
Q  134 aataggggaaatgctaaagagtgttcttgggacattggttaaaagaacaataatagaaatattgt 198  Q
    |||| ||||||| ||||||||||||||| ||||||||| ||| || |  | ||||||||||||||    
T  37361 aataagggaaatactaaagagtgttcttaggacattggataagaggattaaaatagaaatattgt 37425  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 62629 - 62694
Alignment:
Q  213 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  62629 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 62694  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 69961 - 70026
Alignment:
Q  213 aaaagtgatgaattcaactttttaaaagtttgaaaaattgtaattttcaatgtaaaactactattttt 280  Q
    ||||||| ||||||||||||| ||||||||  ||||||| ||||||| |||| |||| ||||| ||||    
T  69961 aaaagtgttgaattcaactttctaaaagtt--aaaaattataatttttaatgcaaaattactactttt 70026  T

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