View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_20 (Length: 308)
Name: NF2258_low_20
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 43528003 - 43528245
Alignment:
| Q |
1 |
aataccccaaccctacctatgataaatatgtctcaccaatcttctacacaactggagactttatctttgtgtagatcatccgactttggaggttagccca |
100 |
Q |
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| T |
43528003 |
aataccccaaccctacctatgataaatatgtctcaccaatcttctacacaactggagactttatctttgtgtagatcatccgactttggaggttagccca |
43528102 |
T |
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| Q |
101 |
atatatatctcaccaatgtcgttttgaatatcaatctggtgtgtttgaaaagaatcaaaattacagtgctagtatccccggtgagaaaatacgagactaa |
200 |
Q |
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| T |
43528103 |
atatatatctcaccaatgtcgttttgaatatcaatctgctgtgtttgaaaagaatcaaaattacagtgctagtatccccggtgagaaaatacgagactaa |
43528202 |
T |
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| Q |
201 |
tctcttgaggtagaaaatatgaagattagactaatcctttgag |
243 |
Q |
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| T |
43528203 |
tctcttgaggtagaaaatatgaagattagactaatcctttgag |
43528245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 43528429 - 43528479
Alignment:
| Q |
245 |
tattcaaaatattatttgttgttggggactcccaatagcaacaattaccct |
295 |
Q |
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| T |
43528429 |
tattcaaaatattatttgttgttggggactcccaatagcaacaattaccct |
43528479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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