View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_22 (Length: 292)
Name: NF2258_low_22
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 48125846 - 48125580
Alignment:
| Q |
16 |
tcatatataactctgcaagttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaac |
115 |
Q |
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| T |
48125846 |
tcatatataactctgtaagttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaattctttggctagaaactatgtattttgtaac |
48125747 |
T |
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| Q |
116 |
aagtttcaaggttct--gagtacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaaattacatttcg |
213 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48125746 |
aagtttcaaggttctatgagtacgaaacttttgttcccttaccacatttagttcatattatgtttttgtttctctttgtttaacttcaaattacatttcg |
48125647 |
T |
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| Q |
214 |
cggtggaattctatagacttcatccgtgtttgaagtgcctaggaaactattattggctttagatatt |
280 |
Q |
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| T |
48125646 |
cggtggaattctatagactacatccgtgtttgaagtgcctaggaaactattattggctttagatatt |
48125580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 178
Target Start/End: Original strand, 48139048 - 48139194
Alignment:
| Q |
34 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--g |
131 |
Q |
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| T |
48139048 |
gttatttttgcagattgaaaggcgtcaatcggaatttggaaaggtcaaagatttattgactacaaactattcatctcggaataagtttgaaggctattca |
48139147 |
T |
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| Q |
132 |
agtacgaaacttttgttcccttaccacatttagttcatattatgttt |
178 |
Q |
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| T |
48139148 |
agtatggaaattttatccccttaccacatttagttcatgttatgttt |
48139194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 48115760 - 48115614
Alignment:
| Q |
35 |
ttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaaggttct--ga |
132 |
Q |
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|||||||||||||||||| ||| |||||| |||||| |||| |||||| |||||| |||||| |||| ||| | ||| ||||||||||| | | | |
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| T |
48115760 |
ttatttttgcaggttgaacggcatcaatcagaatttggaaaagtcaaaggattattgactagaagctatttatctcctaataagtttcaaggctatacaa |
48115661 |
T |
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| Q |
133 |
gtacgaaacttttgttcccttaccacatttagttcatattatgtttt |
179 |
Q |
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||||| | || ||||||| ||||| ||||||||| || ||||||||| |
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| T |
48115660 |
gtacggatctgttgttcctttaccgcatttagtttatgttatgtttt |
48115614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 48135938 - 48135885
Alignment:
| Q |
38 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
91 |
Q |
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| T |
48135938 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
48135885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 32022294 - 32022433
Alignment:
| Q |
32 |
aagttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactatgtattttgtaacaagtttcaagg--ttc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| |||||||||||||| | ||||||||| | || || |
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| T |
32022294 |
aagttatttttgcaggttgaaaggcgtcaatctgaattcggaaaggtcaaagaattattgagtagaaactatgtatctcacaacaagtttgagggctgtc |
32022393 |
T |
|
| Q |
130 |
tgagtacgaaacttttgttcccttaccacatttagttcat |
169 |
Q |
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|||| ||||||||||||||||| || ||||||||||| |
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| T |
32022394 |
caagtatgaaacttttgttcccttttcatatttagttcat |
32022433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 70
Target Start/End: Original strand, 32010337 - 32010375
Alignment:
| Q |
32 |
aagttatttttgcaggttgaaaggcgtcaatctgaattt |
70 |
Q |
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| T |
32010337 |
aagttatttttgcaggttgaaaggcgtcaatctgaattt |
32010375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 25251722 - 25251791
Alignment:
| Q |
34 |
gttatttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattggctagaaactat |
103 |
Q |
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| T |
25251722 |
gttatttttgcagattgaaaggcgtcaatccgaatttggaaaggtcaaagatttattgactacaaactat |
25251791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 25247916 - 25247863
Alignment:
| Q |
38 |
tttttgcaggttgaaaggcgtcaatctgaatttagaaaggtcaaaaatttattg |
91 |
Q |
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||||||||||||||||| ||||||| ||||| ||||||||||| |||||||| |
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| T |
25247916 |
tttttgcaggttgaaagccgtcaattagaattcggaaaggtcaaagatttattg |
25247863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 25252007 - 25252048
Alignment:
| Q |
239 |
gtgtttgaagtgcctaggaaactattattggctttagatatt |
280 |
Q |
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||||||||||| | | |||||||||||||||||||||||||| |
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| T |
25252007 |
gtgtttgaagtacttgggaaactattattggctttagatatt |
25252048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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