View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_low_24 (Length: 276)
Name: NF2258_low_24
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 270
Target Start/End: Original strand, 38279905 - 38280156
Alignment:
| Q |
20 |
gaagtatgctttttataattgagtatgattattctttttgaacgatgattttttcctgtttaaataatgaaaactaaa-atgttcaatttcaatcaatgt |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38279905 |
gaagtatactttttataattgagtatgattattctttttgaacgatgattttttcctgtttaaataatgaaaactaaggatgttcaatttcaatcaatgt |
38280004 |
T |
|
| Q |
119 |
ggagcttgttggagtttcatgaaacatattgaaataaacctcacattgtccattgtaataaaggaagttggaggccaacattatatattaactcaaattc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38280005 |
ggagcttgttggagtttcatgaaacatattgaaataaacctcacattgtccattgtaataaaggaagttggaggccaacattatatattgactcaaattc |
38280104 |
T |
|
| Q |
219 |
tttgttactcccaccaccgttccaatttaatcgaaccagtttttcatctcac |
270 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||| ||||||||||| |||| |
|
|
| T |
38280105 |
tttgttactcccaccaccatcccagtttaatcgaatcagtttttcatttcac |
38280156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University