View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_27 (Length: 250)
Name: NF2258_low_27
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 9362909 - 9363056
Alignment:
| Q |
95 |
ttttttatagagtagtgatacatatacaaccatttgtgacttttccaacaaatacttttccatacacactaccctcgattaatggttaagacattcaaat |
194 |
Q |
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| T |
9362909 |
ttttttatagagtagtgatatatgtacaaccatttgtgacttctccaacaaatatttttccatacacactaccctcgattaataattaagacactcaaat |
9363008 |
T |
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| Q |
195 |
atctatgttggtgactcattctaccattttggtcttgcaagtataatt |
242 |
Q |
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| T |
9363009 |
atctatgttggtgactcattctaccatttgggtcttgtaagtttaatt |
9363056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 9335902 - 9336113
Alignment:
| Q |
7 |
aattttcatttatctaaaagggaacttgtattagaggacttttagtggtggttcttaacgggtagaaggtatgattctcattttatagttttttatagag |
106 |
Q |
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| T |
9335902 |
aattctcacttatctaaaagggaacttgtataagag-------agtggtggttcttaacaggtagaaggtatgattctcattatatagtttt--atagag |
9335992 |
T |
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| Q |
107 |
tagtgatacatatacaaccatttgtgacttttccaacaaatacttttccatacacactaccctcgattaatggttaagac---attcaaatatctatgtt |
203 |
Q |
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| T |
9335993 |
tagtgatacatgtacaaccatttgtgacatctccaacaaatatttttccatacacactaccctcgatcaatagttaaaacagtactcaaatatcta---t |
9336089 |
T |
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| Q |
204 |
ggtgactcattctaccattttggt |
227 |
Q |
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| T |
9336090 |
ggtgactcattctaacattttggt |
9336113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 9359640 - 9359733
Alignment:
| Q |
7 |
aattttcatttatctaaaagggaacttgtattagaggacttttagtggtggttcttaacgggtagaaggtatgattctcattttatagtttttt |
100 |
Q |
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| T |
9359640 |
aattttcacttatctaaaagggaacttgtataagaggacttttagtggtggttcttaacaggtagaaggtatgatgctcattttatagtttttt |
9359733 |
T |
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