View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_30 (Length: 248)
Name: NF2258_low_30
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 48126133 - 48126362
Alignment:
| Q |
1 |
cgacattgacaaattgtctttgattattgaaaaattgaatatgtcagtactaacacttgttggacacgggacacacgtttgattaaaaagtgttgtgtaa |
100 |
Q |
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| T |
48126133 |
cgacattgacaaattgtctttgattattgaaaaattgaatatgtcagtactaacacttgttggacacgggacacacgtttgattaaaaagtgttgtgtaa |
48126232 |
T |
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| Q |
101 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
200 |
Q |
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| T |
48126233 |
cagagagactctgattaaaaatctgagtggtgaaaattgtataaaggaatgaataataataatagtaactaacctgccttggaggttgatgggttgaata |
48126332 |
T |
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| Q |
201 |
acggagttgtgttatgaaacgtctccaaca |
230 |
Q |
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| T |
48126333 |
acggagttttgttatgaaacgtctccaaca |
48126362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 48138639 - 48138541
Alignment:
| Q |
130 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
228 |
Q |
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| T |
48138639 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcgttatgaatcgcctccaa |
48138543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 25251314 - 25251216
Alignment:
| Q |
130 |
gtgaaaattgtataaaggaa-tgaataataataatagtaactaacctgccttggaggttgatgggttgaataacggagttgtgttatgaaacgtctccaa |
228 |
Q |
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| T |
25251314 |
gtgaaaattgtataaaggaaatgagtaataataata---actaacctgccatggagattgatgggttgaataacggaggtgcattatgaatcgcctccaa |
25251218 |
T |
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