View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_35 (Length: 224)
Name: NF2258_low_35
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_35 |
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| [»] chr6 (7 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2369279 - 2369056
Alignment:
| Q |
1 |
tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2369279 |
tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca |
2369180 |
T |
|
| Q |
101 |
ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
2369179 |
ataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattccagggcaaatcc |
2369080 |
T |
|
| Q |
201 |
ttctaccacctccaaatggtaata |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2369079 |
ttctaccacctccaaatggtaata |
2369056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2363533 - 2363310
Alignment:
| Q |
1 |
tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2363533 |
tcacataatttcataacaattcgaagacaaacgtggctttataagaatctcaagaggagttgttttggtgttgcttaatccaaaagtttcattcatatca |
2363434 |
T |
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| Q |
101 |
ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc |
200 |
Q |
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| T |
2363433 |
ataggttcacttgatggatttaagatttcaaaggaatgcaaaaaactagccaaagttaaatgcagcatttgaagccctaatgatattccgggacaaatcc |
2363334 |
T |
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| Q |
201 |
ttctaccacctccaaatggtaata |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
2363333 |
ttctaccacctccaaatggtaata |
2363310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2307768 - 2307545
Alignment:
| Q |
1 |
tcacataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatca |
100 |
Q |
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|||||| |||||||| ||||| ||||||| |||| ||||| ||||||| ||||||||| | ||| ||||| ||||||||||| | |||| |||||||| |
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| T |
2307768 |
tcacatgatttcataacaattgatagacaaatgtggtttaatgagaatcttaagaggagtagctttagtgtttgttaatccaaaggattcactcatatca |
2307669 |
T |
|
| Q |
101 |
ataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattc |
200 |
Q |
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| | ||||| | |||||||| ||| ||||||||||||||||||||||| | | | ||||||| ||||||||| |||| ||| ||||| ||||| || | |
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| T |
2307668 |
acaagttcaggggttggatttaagatatcaaaggaatgcaaaaaactagctagaatgaaatgcagcatttgaagtccaagtgatattccagggcatatcc |
2307569 |
T |
|
| Q |
201 |
ttctaccacctccaaatggtaata |
224 |
Q |
| |
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||||||||| ||||||||| |||| |
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| T |
2307568 |
ttctaccacttccaaatggcaata |
2307545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 87 - 222
Target Start/End: Original strand, 2261160 - 2261295
Alignment:
| Q |
87 |
tttcagtcatatcaataggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacat |
186 |
Q |
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||||||||||||||| ||||||||| ||| |||||| ||||||||||| || |||||| |||||||||||||||| | ||| ||||| ||||| || || |
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| T |
2261160 |
tttcagtcatatcaacaggttcactagatccatttacaatttcaaaggagtgtaaaaaattagccaaagttaaatgaatcatatgaagaccaaaagatat |
2261259 |
T |
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| Q |
187 |
tcctgggcaaattcttctaccacctccaaatggtaa |
222 |
Q |
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|||||| || || |||||||||| |||||||||||| |
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| T |
2261260 |
tcctggacatatccttctaccacttccaaatggtaa |
2261295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 2340425 - 2340226
Alignment:
| Q |
25 |
agacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacg |
124 |
Q |
| |
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|||||||||||| ||||| ||||||||||| ||||| | ||||| || ||| ||||||| | |||| ||||||||| || ||| || |||||||| | |
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| T |
2340425 |
agacaaacgtggtttaatgagaatctcaagtggagtagctttggaattcgttgatccaaaggcttcactcatatcaacagcatcaggtgttggatttaag |
2340326 |
T |
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| Q |
125 |
atttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggtaata |
224 |
Q |
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| T |
2340325 |
atatcaaaggaatgcaaaaaactagctagggtgaaatgcagcatttgaagtccaaacgatattccaggacatttccttctaccacttccaaatggtaata |
2340226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 2351870 - 2351682
Alignment:
| Q |
33 |
gtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacgatttcaaa |
132 |
Q |
| |
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|||| ||||| ||||||||||| ||||| | ||||||||| | ||||||||| |||||||||||||| | || | || |||||||| ||| ||||| |
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| T |
2351870 |
gtggtttaatgagaatctcaagtggagtagctttggtgtttgctaatccaaattcttcagtcatatcaacaagtccgggtgttggatttaagatatcaaa |
2351771 |
T |
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| Q |
133 |
ggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggta |
221 |
Q |
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| T |
2351770 |
ggaatgcaaaaaacttgctagagtgaaatgcacaatttgaagtccaaaagatattgcaggacacttccttctaccacttccaaatggta |
2351682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 2358216 - 2357997
Alignment:
| Q |
3 |
acataatttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaat |
102 |
Q |
| |
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||||| |||| |||||||| |||||||| ||| |||| ||||||||||| || || | ||||| | || |||||||| ||| ||||||||||| |
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| T |
2358216 |
acatagtttcgtagcaattaacagacaaacatggtttaaccagaatctcaagtggggtagctttggagaccgtcaatccaaagacttctgtcatatcaat |
2358117 |
T |
|
| Q |
103 |
aggttcacttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattctt |
202 |
Q |
| |
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||| ||||| |||| || | ||||||||| |||||||||||| |||||||| ||||||||| ||||| || ||||| || ||| | || ||||| ||| |
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| T |
2358116 |
aggctcactcgatgaatacaagatttcaaatgaatgcaaaaaattagccaaaattaaatgcatcatttctagtccaaaagatatttcaggacaaatcctt |
2358017 |
T |
|
| Q |
203 |
ctaccacctccaaatggtaa |
222 |
Q |
| |
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||||||| |||||||||||| |
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| T |
2358016 |
ctaccacttccaaatggtaa |
2357997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 4306222 - 4306008
Alignment:
| Q |
10 |
ttcatagcaattcgaagacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttca |
109 |
Q |
| |
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|||||| ||||| |||| |||||| ||||||||||||||||| || ||||||| ||| |||||| | |||||||| |||||||||||||||||||||| |
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| T |
4306222 |
ttcataacaattagaaggcaaacgaggcttaataagaatctctagtggagttgccttgtggttggtgattccaaaagcttcagtcatatcaataggttca |
4306123 |
T |
|
| Q |
110 |
cttgatggatttacgatttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccac |
209 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||||||| ||||| |||||||||| |
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| T |
4306122 |
gctgatgcctttgagatttcaaaggaatgcaaaaaactagccaaagataaatgcaccatttgaaggccataagatattcctggacaaatccttctaccac |
4306023 |
T |
|
| Q |
210 |
ctccaaatggtaata |
224 |
Q |
| |
|
|||||||||||||| |
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|
| T |
4306022 |
ttccaaatggtaata |
4306008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 220
Target Start/End: Original strand, 5804059 - 5804254
Alignment:
| Q |
25 |
agacaaacgtggcttaataagaatctcaagaggagttgttttggtgttggttaatccaaaagtttcagtcatatcaataggttcacttgatggatttacg |
124 |
Q |
| |
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|||||||||||| ||||| ||||| ||||| ||||| | |||| | || ||||||||||| |||||||||||||||| ||||| || |||||||| | |
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| T |
5804059 |
agacaaacgtggtttaatgagaatttcaagtggagtagctttgctatttgttaatccaaattcttcagtcatatcaataagttcaggtgttggatttaag |
5804158 |
T |
|
| Q |
125 |
atttcaaaggaatgcaaaaaactagccaaagttaaatgcaccatttgaaggccaaatgacattcctgggcaaattcttctaccacctccaaatggt |
220 |
Q |
| |
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|| ||||||||||||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| || || | |||||||||| |||||||||| |
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| T |
5804159 |
atatcaaaggaatgcaaaaaactagctagagtaaaatgcaccatttgaagtccaaaacatattccaggacatttccttctaccacttccaaatggt |
5804254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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