View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_low_5 (Length: 429)
Name: NF2258_low_5
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 329142 - 329537
Alignment:
| Q |
13 |
aatatcaatgattttgtcgtaacacattccaaaaccttgtttaattaccctggcttattgacatgctggcaataattacattcaaaattaatcttgcaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
329142 |
aatatcaatgattttgtcgtaacacattccaaaaccttgtttaattaccctggcttattgacatgctggcaataatgacattcaaaattaatcttgcaga |
329241 |
T |
|
| Q |
113 |
gctgacatttggtcatttggcataactgcattggagcttgcccatggccatgctcctttctcaaaatatccaccattgaaggtgtgtgtgcacatactat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329242 |
gctgacatttggtcatttggcataactgcattggagcttgcccatggccatgctcctttctcaaaatatccaccattgaaggtgtgtgtgcacatactat |
329341 |
T |
|
| Q |
213 |
catagtatttgctataagcactcaaaattttattccatttttctttgtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329342 |
catagtatttgctataagcactcaaaattttatcccatttttc--tgtttaatttcataataattaaactttccaggtactgcttatgactttgcaaaat |
329439 |
T |
|
| Q |
313 |
gcacctccaggccttgactacgaaagggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
329440 |
gcacctccaggccttgactacgaaagggacaagaagttctctaaggtcagcccagttcagtttgattccatcatttgctgattgctcctgtaagcaaa |
329537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 1202405 - 1202352
Alignment:
| Q |
293 |
tgcttatgactttgcaaaatgcacctccaggccttgactacgaaagggacaaga |
346 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||||| || ||||| ||||||| |
|
|
| T |
1202405 |
tgcttatgactttgcagaatgcccctccaggtcttgattatgaaagagacaaga |
1202352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University