View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2258_low_7 (Length: 400)
Name: NF2258_low_7
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 42 - 387
Target Start/End: Original strand, 5070707 - 5071055
Alignment:
| Q |
42 |
aaaaagctaaatttgtccaaccaaattagcaatgagggagaattgaaccttatatctagagg---agtatacttcaagatcttaagtcaacactacaatg |
138 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||| |
|
|
| T |
5070707 |
aaaaagttaaatttgtccaaccaaattagcaatgagggagaattgaaccttatatctagaggaggagtatacttcaagatcttaagtcaacattataatg |
5070806 |
T |
|
| Q |
139 |
tcaaaccaaaataggttagagtcaaatatgttataagaaattagtttcaacaataaaccataatttccatcagtttttcaagtcattcttgactcgcaag |
238 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5070807 |
tcaacccaaaataggttagattcaaatatgttataagaaattagtttcaacaataaaccataattttcatcagtttttcaagtcattcttgactcgcaag |
5070906 |
T |
|
| Q |
239 |
aagatctctacgcagatggtgagaaaaagcttgaatccttccttaaatgaattctctctttccatggtgtttagaaagtatttcctaaccctagaacctc |
338 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5070907 |
aagatctctacgcagatggtgagagaaagcttgaatccttccttaaatgaattctctctttccatggtgtttagaaagtatttcctaaccctagaacctc |
5071006 |
T |
|
| Q |
339 |
aaccaagatgtatgaactctcaaaacactagctttttgtgtttcatctc |
387 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5071007 |
aaccaagatgtataaactctcaaaacactagctttttgtgtttcatctc |
5071055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University