View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2258_low_9 (Length: 379)
Name: NF2258_low_9
Description: NF2258
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2258_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 49008715 - 49009069
Alignment:
| Q |
11 |
caaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgt |
110 |
Q |
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| T |
49008715 |
caaaggtgattacacaagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgt |
49008814 |
T |
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| Q |
111 |
tagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtt |
210 |
Q |
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| T |
49008815 |
tagtgttatcccaaacaagttggtgtttaaggagaaaaatgaaaaggtggcatacaagttgaggatagaaggtcccaaaatggaggaaaataaagtagtt |
49008914 |
T |
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| Q |
211 |
tttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagt |
310 |
Q |
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| T |
49008915 |
tttgggtatctcacttggacagactcgaaacacaatgtcagaagtcccattgttgtgactagcctcaactcagaattaacacccccatagagcttaaagt |
49009014 |
T |
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| Q |
311 |
gtttccttgaatattaatgattgcttaggttaagatgaggatattatgcttctac |
365 |
Q |
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| T |
49009015 |
gtttccttgaatattaatgattgcttaggttaagatgaggatattatgcttctac |
49009069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 9947920 - 9947862
Alignment:
| Q |
79 |
gccaacattacacctattgaagggttccatgttagtgttatcccaaacaagttggtgtt |
137 |
Q |
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| T |
9947920 |
gccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgtt |
9947862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 8958637 - 8958694
Alignment:
| Q |
95 |
ttgaagggttccatgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
152 |
Q |
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| T |
8958637 |
ttgaagggttccatgtcagtgttatcccaaacaagttggtattcaatgagaagaatga |
8958694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 8945503 - 8945391
Alignment:
| Q |
25 |
caagaatttcaaagaacagtaaccaatgttggagaggaaccaaccatctacgtagccaacattacacctattgaagggttccatgttagtgttatcccaa |
124 |
Q |
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| T |
8945503 |
caagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgtgttagtgctatcccaa |
8945404 |
T |
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| Q |
125 |
acaagttggtgtt |
137 |
Q |
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| T |
8945403 |
ataagttgatgtt |
8945391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 8975049 - 8975089
Alignment:
| Q |
97 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
137 |
Q |
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| T |
8975049 |
gaagggttccatgttagagttatcccaaataagttggtgtt |
8975089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 25927991 - 25927947
Alignment:
| Q |
108 |
tgttagtgttatcccaaacaagttggtgtttaaggagaaaaatga |
152 |
Q |
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| T |
25927991 |
tgttagtgttatcccaaacaagttagtgtttaatgagaagaatga |
25927947 |
T |
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