View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2259_high_1 (Length: 412)
Name: NF2259_high_1
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 955121 - 954740
Alignment:
| Q |
1 |
ttattttagatgtgggttgtgaggaaggagaaaaagagtgaaagggattgctttggatcgaagtcacaaaaagaaagggattccttttcatttgtatgtt |
100 |
Q |
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| T |
955121 |
ttattttatatgtgggttttgaggaaggagaaaaagggtgaaagggatggctttggattgaagtcacaaaaagaaagggattccttttcatttgtatgtt |
955022 |
T |
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| Q |
101 |
actattggtgatatttgctttggttcaccctaatgtttatgttatcatgttttgcttttcttcacaaactgagtcttcctctttataaggcaaataaaag |
200 |
Q |
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| T |
955021 |
actattggtgatatttgctttggttcaccctaatgtttatgttatcatgttttgcttttcttcacaaactgagtcttcctctttataaggcaaacaaaag |
954922 |
T |
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| Q |
201 |
atgcttgaatgatgatggcaagcaagttaaacaaaaatgcttttttgtttccttgaagaaagttgtatgttataataccatattgtgtttggaaaaaata |
300 |
Q |
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| T |
954921 |
atgcttgaatgatgatggcaagcaagttaaacaaaaatgcttttttgtttccttgaggaaagttgtatgttataataccatattgtgtttggaaaaaata |
954822 |
T |
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| Q |
301 |
ttgttgacaattgtgacaagaaccgattcaacttttgtttgtgcatgctatttagaaacatatatagtggggagctcatgaa |
382 |
Q |
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| T |
954821 |
ttgttgacaattgtgacaagaaccgattcaacttttgtttgtgcatgctatttagaaacatatatagtggggaggtcatgaa |
954740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 45809845 - 45809753
Alignment:
| Q |
5 |
tttagatgtgggttgtgaggaaggagaaaaagagtgaaagggattgctttggatcgaagtcacaaaaagaaagggattccttttcatttgtat |
97 |
Q |
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| T |
45809845 |
tttatatgtgggttttgaggaaggagaaaatgggtgaaagacatggctttggattgaaaccacaacaagaaagagactccttttcatctgtat |
45809753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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