View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2259_high_11 (Length: 213)
Name: NF2259_high_11
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37893336 - 37893124
Alignment:
| Q |
1 |
ggaagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagcttcacgtgtcttttgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893336 |
ggaagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagcttcacgtgtcttttgat |
37893237 |
T |
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| Q |
101 |
caaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893236 |
caaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaat |
37893137 |
T |
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| Q |
201 |
atggggttatgtt |
213 |
Q |
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||||||||||||| |
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| T |
37893136 |
atggggttatgtt |
37893124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 37188439 - 37188227
Alignment:
| Q |
1 |
ggaagcataagaataagtgtgtcacttgtatcctcatgatcccaatcagagggtggttcaaattcatcatagatacgatcagcttcacgtgtcttttgat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188439 |
ggaagcataagaattagtgtgtcacttgtatcctcatgatcccaatcagaggatggttcaaattcatcatagatacgatcagcttcacgtgtcttttgat |
37188340 |
T |
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| Q |
101 |
caaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37188339 |
caaaagacattttctgcttaattggtttctctttagcttttatgtttctagcaaaggtagcttaatttgtctaagctcttgttggtgaatgaaatgaaat |
37188240 |
T |
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| Q |
201 |
atggggttatgtt |
213 |
Q |
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||||||||||||| |
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| T |
37188239 |
atggggttatgtt |
37188227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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