View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2259_high_2 (Length: 408)
Name: NF2259_high_2
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 2182377 - 2181998
Alignment:
| Q |
12 |
agcataggagggatatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctcacctccaactggaagtcctactg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2182377 |
agcataggagggatatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctcacctccaactggaagtcctactg |
2182278 |
T |
|
| Q |
112 |
gtgcaggtcttggactcaactccttctctcaacaaatcattcaatcttggatttcaaaaccaccacagttcctacacaacaccactcatccactaactat |
211 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2182277 |
gtgcaggtcttggactcaactccctctctcaacaaatcattcaatcttggatttcaaaaccaccacaattcctacacaacaccactcatccactaactat |
2182178 |
T |
|
| Q |
212 |
tgatcaggtctatttccaccatctctttatctttattttatttgcttaatgttactatattaatatcaattatgtcatttgtccatgaagtgtttgttta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
2182177 |
tgatcaggtctatttccaccatctctttatctttattttatttgcttaatgttactatattaatatcaattatctcatttgtcaatgaagtgtttgttta |
2182078 |
T |
|
| Q |
312 |
gtggtacgagctcgactttataactttaactgatagagttccaatctcatgtaggacaattgtaaaatgattgatcataa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2182077 |
gtggtacgagctcgactttataactttaactgatagagttccaatctcatgtaggacaattgtaaaatgattgatcataa |
2181998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 2184208 - 2184347
Alignment:
| Q |
24 |
atatcaagtgcacatgcccttatcttagctggttgggatgtccttgtccttgaaaaaaccacctcacctccaactggaagtcctactggtgcaggtcttg |
123 |
Q |
| |
|
|||||||||||| |||| |||| ||||| ||||||||||| |||| ||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2184208 |
atatcaagtgcaaatgctcttactttagcaggttgggatgttattgttcttgaaaaaaccatttcacctccaactggaaatcccactggtgcaggtcttg |
2184307 |
T |
|
| Q |
124 |
gactcaactccttctctcaacaaatcattcaatcttggat |
163 |
Q |
| |
|
|||||| | |||||||| |||||||||| |||||||| |
|
|
| T |
2184308 |
ctctcaaccctctctctcaaaaaatcattcactcttggat |
2184347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University