View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2259_low_1 (Length: 484)
Name: NF2259_low_1
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 473
Target Start/End: Original strand, 53085695 - 53086160
Alignment:
| Q |
8 |
catcatcatatattatcatttcatttcataaacatgataaaaatcaaaccaatagtatataccaaataaaaatattagatatttacttccaccgtatatg |
107 |
Q |
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| T |
53085695 |
catcatcatatattatcatttcatttcataaacatgataaaaatcaaaccaatagtatataccaaataaaaatattagatatttacttccaccgtatatg |
53085794 |
T |
|
| Q |
108 |
gttctttgaagttttctctatcaatcctattccttcaagaacatttgtaatgtcataaattctccttttttgaacctgaagacaaatgtcaaattactat |
207 |
Q |
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| T |
53085795 |
gttctttgaagttttctctatcaatcctattccttcaagaacatttgtaatgtcataaattctccttttttgaacctgaagacaaatgtcaaattactat |
53085894 |
T |
|
| Q |
208 |
tattaaaaaatgttaaattatattatacatgtcttattaaagcactaggaggtgaagctcaaaatcaggcctgctaatacgaaccatcgggcatatatac |
307 |
Q |
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| T |
53085895 |
tattaaaaaatgttaaattatattatacatgtcttattaaagcactaggaggtgaagctcaaaatcagacctgctaatacgaaccatcgggcatatatac |
53085994 |
T |
|
| Q |
308 |
aatgaaagacaatttctatacctttaagatctcagcagttttatttagatcaagggtaccatccttagcctcattgatcaaactgataaatttcttggtt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53085995 |
aatgaaagacaatttctatacctttaagatctcagcagttttatttagatcaagggtaccatccttagcctcattgatcaaactgataaatttcttggtt |
53086094 |
T |
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| Q |
408 |
agcaatcctgcaaacagtacatgatgtagctgttcgtcataaaaagagctaaattaatgacaaaaa |
473 |
Q |
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| T |
53086095 |
agcaatcctgcaaacagtacatgatgtagctgttcgtcataaaaagagctaaattaatgacaaaaa |
53086160 |
T |
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