View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2259_low_5 (Length: 360)
Name: NF2259_low_5
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 36137052 - 36137388
Alignment:
| Q |
18 |
caatcaagcgtcggaagacccaaccgctagcagcagtaaaaatagctggtgacggctggaactcgccgtcaaactccggtggcgatgacatgggttcaac |
117 |
Q |
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| T |
36137052 |
caatcaagcgtcggaagacccaaccgctagcagcagtaaaattagctggtgatggctggaactcgccgtcaaactccggtggcgatgacatgggttcaac |
36137151 |
T |
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| Q |
118 |
ctcaacaggatcagtagaactaaatacccattgccccgatttatcaagtgagaacaaaaaattgataaaagagaacgagaaattgagctgtgaattggca |
217 |
Q |
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| T |
36137152 |
cttaacaggatcagtagaactaaatacccattgccccgatttatcaagtgagaacaaaaaattgataaaagagaacgagaaattgagctgtgaattggca |
36137251 |
T |
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| Q |
218 |
cgtgaaagaagcagtgcagcgagttggtagcttttctaccggatactgtcaatgtgggacatgatcaggttaactgcatcatccggcaaggaacacgtgt |
317 |
Q |
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| T |
36137252 |
cgtgaaagaagcagtgcagcgagttggtagcttttctacgggatactgtcaatgtgggacatgatcaggttaactgcatcatccggcaaggaacacatgt |
36137351 |
T |
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| Q |
318 |
gtctagtctcaatgtggagcgttttgatgatgtccat |
354 |
Q |
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| T |
36137352 |
gtctagtctcaatgtggagcgttttgatgatgaccat |
36137388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 67 - 296
Target Start/End: Complemental strand, 36137799 - 36137570
Alignment:
| Q |
67 |
tgacggctggaactcgccgtcaaactccggtggcgatgacatgggttcaacctcaacaggatcagtagaactaaatacccattgccccgatttatcaagt |
166 |
Q |
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| T |
36137799 |
tgacggcaggaactcggcgtgaaactctggtgctgaagatatgggatcaacctcgacgggatcagtagaaccaaacacccgttgcat-gatttatccatt |
36137701 |
T |
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| Q |
167 |
gagaacaaaaaattgataaaagagaacgagaaattgagctgtgaattggcacgtga-aagaagcagtgcagcgagttggtagcttttctaccggatactg |
265 |
Q |
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| T |
36137700 |
gagaacaaaagattaaaaaaagacaacgagaaattgaaaggtgaatcggcacttgcgaagaagtagtgcaacaagttagtagcttttctacaggacattg |
36137601 |
T |
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| Q |
266 |
tcaatgtgggacatgatcaggttaactgcat |
296 |
Q |
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| T |
36137600 |
tcaatgtgggaccagatcagattaattgcat |
36137570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 41340164 - 41340034
Alignment:
| Q |
147 |
attgccccgatttatcaagtgagaacaaaaaattgataaaagagaacgagaaattgagctgtgaattggcacgtg-aaagaagcagtgcagcgagttggt |
245 |
Q |
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| T |
41340164 |
attgcccggatttatccagtgagaacaaaagattaaaaaaagacaacgataaattgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagt |
41340065 |
T |
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| Q |
246 |
agcttttctaccggatactgtcaatgtggga |
276 |
Q |
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| T |
41340064 |
agcttttctacaggacattgtcaatgtggga |
41340034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 41339779 - 41339838
Alignment:
| Q |
289 |
aactgcatcatccggcaaggaacacgtgtgtctagtctcaatgtggagcgttttgatgat |
348 |
Q |
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| T |
41339779 |
aactgcatcatccggcaaggaacacgtgtgtccagcctaaatgtggcgcgtttttatgat |
41339838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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