View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2259_low_7 (Length: 272)

Name: NF2259_low_7
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2259_low_7
NF2259_low_7
[»] chr5 (12 HSPs)
chr5 (18-261)||(31363155-31363398)
chr5 (22-261)||(31313409-31313648)
chr5 (33-261)||(31330098-31330326)
chr5 (33-261)||(31378880-31379108)
chr5 (47-245)||(31279196-31279391)
chr5 (103-261)||(31284958-31285113)
chr5 (103-245)||(31317599-31317738)
chr5 (103-245)||(31643591-31643730)
chr5 (152-261)||(31381206-31381312)
chr5 (152-261)||(31332421-31332527)
chr5 (188-261)||(31288785-31288858)
chr5 (62-145)||(31288686-31288767)
[»] chr3 (1 HSPs)
chr3 (171-241)||(25708755-25708825)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 31363155 - 31363398
Alignment:
Q  18 atttgttcatagctaatacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363155 atttgttcatagctaatacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatag 31363254  T
Q  118 tctcatttcatgtgcatcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttgga 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31363255 tctcatttcatgtgcatcctttgctgtctcagcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttgga 31363354  T
Q  218 tgtctaatgatgcagctcatgaagattacattgaaattattcat 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31363355 tgtctaatgatgcagctcatgaagattacattgaaattattcat 31363398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 22 - 261
Target Start/End: Original strand, 31313409 - 31313648
Alignment:
Q  22 gttcatagctaatacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctc 121  Q
    |||| ||||| ||||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||    
T  31313409 gttcgtagctcatacaacatttgttgtattggcaatcacgtcactgtattcatatttttttgataaattaatggataatacaccagatgcatatagtctc 31313508  T
Q  122 atttcatgtgcatcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtc 221  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||    
T  31313509 atttcatgtgcatcctttgctgtcacggcgcttagtttgtcgaggaacaaaattcaatgcggatttgaaatcgatcttctatattttcttcttggatgtc 31313608  T
Q  222 taatgatgcagctcatgaagattacattgaaattattcat 261  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  31313609 taatgatgcaactcatgaagattacattgaaattattcat 31313648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 31330098 - 31330326
Alignment:
Q  33 atacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctcatttcatgtgc 132  Q
    ||||||||| ||||||||||||||| || || || ||||| ||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  31330098 atacaacatatgttgtattggcaatcacgtcgctatattcatatttttttgataaattaatgcatataacaccagatgcatatagtctcatttcatgtgc 31330197  T
Q  133 atcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcag 232  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||     
T  31330198 atcctttgctgtcacggcgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatattttcttctaggatgtctaatgatgcaa 31330297  T
Q  233 ctcatgaagattacattgaaattattcat 261  Q
    ||||||||||||| |||||||||||||||    
T  31330298 ctcatgaagattaaattgaaattattcat 31330326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 261
Target Start/End: Original strand, 31378880 - 31379108
Alignment:
Q  33 atacaacatttgttgtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctcatttcatgtgc 132  Q
    ||||||||| ||||||||||||||| || || || ||||| ||||| |||||||| ||||||||||  ||||||||||||||||||||||||||||||||    
T  31378880 atacaacatatgttgtattggcaatcacgtcgctatattcatattttttcgataagttaatgcatataacaccagatgcatatagtctcatttcatgtgc 31378979  T
Q  133 atcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcag 232  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||     
T  31378980 atcctttgctgtcacggtgcttagtttgtcgaggaacaaaactcaatgcggatttgaaatcgatcttctatattttcttctaggatgtctaatgatgcaa 31379079  T
Q  233 ctcatgaagattacattgaaattattcat 261  Q
    ||||||||||||| |||||||||||||||    
T  31379080 ctcatgaagattaaattgaaattattcat 31379108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 245
Target Start/End: Complemental strand, 31279391 - 31279196
Alignment:
Q  47 gtattggcaatgacatcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctcatttcatgtgcatcctttgctgtct 146  Q
    |||||| ||||||| || || ||||| | ||||||||||||||| ||| ||   | ||| |||| |||||| |||||||||||||| ||||||||| ||     
T  31279391 gtattgacaatgacctcgctatattcatttttcttcgataaattgatgaatgggaaacctgatggatatagcctcatttcatgtgcttcctttgctatca 31279292  T
Q  147 cggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaagatta 245  Q
     | | |||||||||||  || |   |||||| |||||||||||| | ||||||||||| ||  ||||||||||||||||  | || |||||||||||||    
T  31279291 tgtcacttagtttgtcgcggca---aactcagtgcggatttgaagttgatcttctttacttttttcttggatgtctaattgtacaactcatgaagatta 31279196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 261
Target Start/End: Original strand, 31284958 - 31285113
Alignment:
Q  103 accagatgcatatagtctcatttcatgtgcatcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctt 202  Q
    ||||||||||||||| |||||||||||||| |||||| || ||  |    | ||||||||| || |   ||||||||||||||||||| ||||| |||||    
T  31284958 accagatgcatatagcctcatttcatgtgcttccttttctatcatgttaatgagtttgtcacggca---aactcaatgcggatttgaagtcgattttctt 31285054  T
Q  203 tatttccttcttggatgtctaatgatgcagctcatgaagattacattgaaattattcat 261  Q
    || ||  |||| |||||| ||||  |||| ||||||||||||| |||| | ||||||||    
T  31285055 tacttttttctcggatgtttaattgtgcaactcatgaagattaaattgcagttattcat 31285113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 245
Target Start/End: Original strand, 31317599 - 31317738
Alignment:
Q  103 accagatgcatatagtctcatttcatgtgcatcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctt 202  Q
    |||||||||||||||| | |||||||||||  |||||||| |   | | ||||||||||||||| |   |||||| || ||||||||||| |||||||||    
T  31317599 accagatgcatatagtttaatttcatgtgctgcctttgctattatgtcacttagtttgtcaaggca---aactcagtggggatttgaaattgatcttctt 31317695  T
Q  203 tatttccttcttggatgtctaatgatgcagctcatgaagatta 245  Q
    |||||  | || |||||||||||  | || |||||||||||||    
T  31317696 tattttttcctgggatgtctaattgttcaactcatgaagatta 31317738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 245
Target Start/End: Complemental strand, 31643730 - 31643591
Alignment:
Q  103 accagatgcatatagtctcatttcatgtgcatcctttgctgtctcggcgcttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctt 202  Q
    ||||||||||||||| |||||||| ||||| ||||||||| ||  | | ||||||||||| | | |   |||| | |||||||||||| |||||||||||    
T  31643730 accagatgcatatagcctcatttcttgtgcttcctttgctatcatgtcacttagtttgtcgacgca---aactgagtgcggatttgaattcgatcttctt 31643634  T
Q  203 tatttccttcttggatgtctaatgatgcagctcatgaagatta 245  Q
    || ||  | ||||||||||||||  | || |||||||||||||    
T  31643633 tactttttccttggatgtctaattgtccaactcatgaagatta 31643591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 31381206 - 31381312
Alignment:
Q  152 cttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaagattacattga 251  Q
    |||||||||||||||||   |||||| |||||||| ||||||||||||||||||||  | || ||| | |||||  |||| ||||||||||||| ||||     
T  31381206 cttagtttgtcaaggaa---aactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgc 31381302  T
Q  252 aattattcat 261  Q
    | ||||||||    
T  31381303 agttattcat 31381312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 31332421 - 31332527
Alignment:
Q  152 cttagtttgtcaaggaacaaaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaagattacattga 251  Q
    ||||||||||||||| |   |||||| |||||||| ||||||||||||||||||||  | || ||| | |||||  |||| ||||||||||||| ||||     
T  31332421 cttagtttgtcaaggca---aactcagtgcggattcgaaatcgatcttctttattttttcctaggaagcctaattgtgcaactcatgaagattaaattgc 31332517  T
Q  252 aattattcat 261  Q
    | ||||||||    
T  31332518 agttattcat 31332527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 31288785 - 31288858
Alignment:
Q  188 gaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaagattacattgaaattattcat 261  Q
    ||||| |||||||||||||   | ||||||||||||||| |||| ||| ||||||||| |||| | ||||||||    
T  31288785 gaaattgatcttctttattgtttccttggatgtctaatggtgcaactcttgaagattaaattgcagttattcat 31288858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 31288686 - 31288767
Alignment:
Q  62 tcactgtattcgtatttcttcgataaattaatgcataatacaccagatgcatatagtctcatttcatgtgcatcctttgctgtc 145  Q
    ||||||||||| | ||||||||||||| || || |||| ||  || |||||||||||||||||| |||||  ||||| ||||||    
T  31288686 tcactgtattcatttttcttcgataaagtagtgaataaaac--catatgcatatagtctcatttgatgtgtttccttcgctgtc 31288767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 241
Target Start/End: Original strand, 25708755 - 25708825
Alignment:
Q  171 aaactcaatgcggatttgaaatcgatcttctttatttccttcttggatgtctaatgatgcagctcatgaag 241  Q
    ||||||| || ||||||||| | ||||||||||||||  ||||||||||||||||  |||| |||||||||    
T  25708755 aaactcagtgtggatttgaagttgatcttctttatttttttcttggatgtctaattgtgcaactcatgaag 25708825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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