View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2259_low_8 (Length: 252)
Name: NF2259_low_8
Description: NF2259
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2259_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 21831309 - 21831237
Alignment:
| Q |
4 |
atccataaccgtaaccgacctctccttcttccctcaatttcctctcttccacttctctacc-aaacacaacac |
75 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21831309 |
atccataactgtaaccgacctctccttcttccctcaatttcctctcttccacttctctaccaaaacacaacac |
21831237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 21831125 - 21831073
Alignment:
| Q |
186 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaa |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21831125 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaa |
21831073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University