View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2260_high_2 (Length: 397)
Name: NF2260_high_2
Description: NF2260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2260_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 34304134 - 34303750
Alignment:
| Q |
1 |
cattgaatattgtcttctgtgttgtattataatgtcaagattttccacacgaactctaacctgttttattttatatatatattaggctctaacctgtttc |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34304134 |
cattgaatattgtcttctgtgttgtgttataatgtcaagattttccacacgaactctaacctgttttattttatatatat--taggctctaacctgtttc |
34304037 |
T |
|
| Q |
101 |
attaacttgcacaatataataaaatattttatgttattagtgctaattatgataagaaacaaaaataagttgtttattattattcataaatagaaacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304036 |
attaacttgcacaatataataaaatattttatgttattagtgctaactatgataagaaacaaaaataagttgtttattattattcataaatagaaacaac |
34303937 |
T |
|
| Q |
201 |
actttataagtcattgtatgaaggtcttattaaaggaaaaatctctcaaatgaaaattaatatagctagtcctctggaccatcatcaaatttcaaagcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34303936 |
actttataagtcattgtatgaaggtcttattaaaggaaaaaactctcaaatgaaaatgaatatagctagtcctctggaccatcatcaaatttcaaagcat |
34303837 |
T |
|
| Q |
301 |
ttgcaagttcttatttggctttagagctggaaataaatttctgagcctcttcagcagttggaagtgcaggaatggctcccttctgtg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34303836 |
ttgcaagttcttatttggctttagagctggaaataaatttctgagcctcttcagcagttggaagtgcaggaatggctcccttctgtg |
34303750 |
T |
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